miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16449 5' -57.4 NC_004084.1 + 16646 0.66 0.651576
Target:  5'- -gGGGCG-GGuGACGCaGccGCUGGa -3'
miRNA:   3'- gaCCUGCuCCuCUGCGcCuuCGACCg -5'
16449 5' -57.4 NC_004084.1 + 32723 0.66 0.651576
Target:  5'- gUGGAUGAGGGGAuCGgGGcAGCa--- -3'
miRNA:   3'- gACCUGCUCCUCU-GCgCCuUCGaccg -5'
16449 5' -57.4 NC_004084.1 + 42378 0.66 0.648349
Target:  5'- -gGGAgcaacgcauccuCGAGGAGGCccgcgcagucacggGCGGAGG-UGGCc -3'
miRNA:   3'- gaCCU------------GCUCCUCUG--------------CGCCUUCgACCG- -5'
16449 5' -57.4 NC_004084.1 + 24026 0.66 0.633274
Target:  5'- aUGGACGcgguugcGGGcucccagacggcgauGGACGCGGuuGC-GGCg -3'
miRNA:   3'- gACCUGC-------UCC---------------UCUGCGCCuuCGaCCG- -5'
16449 5' -57.4 NC_004084.1 + 51451 0.66 0.630042
Target:  5'- uUGG-CGAGG-GcCGCGGcGGCUguacgGGCg -3'
miRNA:   3'- gACCuGCUCCuCuGCGCCuUCGA-----CCG- -5'
16449 5' -57.4 NC_004084.1 + 42333 0.66 0.630042
Target:  5'- -gGGACGAGaucgacGAGGCgGCGGAacucgAGCgccaGGCc -3'
miRNA:   3'- gaCCUGCUC------CUCUG-CGCCU-----UCGa---CCG- -5'
16449 5' -57.4 NC_004084.1 + 24738 0.66 0.630042
Target:  5'- uUGGAUcAGcGAG-CGUGGAAgacgauuugucGCUGGCg -3'
miRNA:   3'- gACCUGcUC-CUCuGCGCCUU-----------CGACCG- -5'
16449 5' -57.4 NC_004084.1 + 9231 0.66 0.619274
Target:  5'- gUGGAgCGAGGAGAaguucaagaGCG--AGCUGGa -3'
miRNA:   3'- gACCU-GCUCCUCUg--------CGCcuUCGACCg -5'
16449 5' -57.4 NC_004084.1 + 55321 0.66 0.618197
Target:  5'- gUGGAUGAGGAGccCGCcGGAacgcacgucgacgAGC-GGCc -3'
miRNA:   3'- gACCUGCUCCUCu-GCG-CCU-------------UCGaCCG- -5'
16449 5' -57.4 NC_004084.1 + 37019 0.66 0.608515
Target:  5'- gCUGGACGuc--GAC-CGGAucaugcccgAGCUGGCa -3'
miRNA:   3'- -GACCUGCuccuCUGcGCCU---------UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 28461 0.66 0.605291
Target:  5'- -cGcGACGAGGAcaucaccugggacuGGCaCGGAgccaacaacgGGCUGGCg -3'
miRNA:   3'- gaC-CUGCUCCU--------------CUGcGCCU----------UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 56067 0.66 0.597777
Target:  5'- ----uCGAGGAcGACGCGGAAcgacgacuCUGGCg -3'
miRNA:   3'- gaccuGCUCCU-CUGCGCCUUc-------GACCG- -5'
16449 5' -57.4 NC_004084.1 + 32447 0.66 0.597777
Target:  5'- -aGGuCGAGGucGAUGgGGAAGCcgaugagaugaUGGCc -3'
miRNA:   3'- gaCCuGCUCCu-CUGCgCCUUCG-----------ACCG- -5'
16449 5' -57.4 NC_004084.1 + 55964 0.67 0.576392
Target:  5'- -gGGuACGAcGGcGACGCGGAggGGCUGa- -3'
miRNA:   3'- gaCC-UGCU-CCuCUGCGCCU--UCGACcg -5'
16449 5' -57.4 NC_004084.1 + 30420 0.67 0.565761
Target:  5'- --cGACG-GGcGGCGaCGGAAGCgaUGGCg -3'
miRNA:   3'- gacCUGCuCCuCUGC-GCCUUCG--ACCG- -5'
16449 5' -57.4 NC_004084.1 + 51615 0.67 0.544662
Target:  5'- --uGACGucGAcGGCGCGGGAGCUGa- -3'
miRNA:   3'- gacCUGCucCU-CUGCGCCUUCGACcg -5'
16449 5' -57.4 NC_004084.1 + 45702 0.67 0.541519
Target:  5'- -cGGAgacaagcaacuccuCGAGGGauccGACGCGGu-GCUGGUc -3'
miRNA:   3'- gaCCU--------------GCUCCU----CUGCGCCuuCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 10983 0.68 0.513519
Target:  5'- uCUGGACugGAGGAGAUGCGGcugacGAGgaGcCg -3'
miRNA:   3'- -GACCUG--CUCCUCUGCGCC-----UUCgaCcG- -5'
16449 5' -57.4 NC_004084.1 + 13774 0.68 0.513519
Target:  5'- gCUGGGCGGgcucGGAGAuCGCGuccGGUUGGUc -3'
miRNA:   3'- -GACCUGCU----CCUCU-GCGCcu-UCGACCG- -5'
16449 5' -57.4 NC_004084.1 + 53005 0.68 0.503299
Target:  5'- -cGGACGGccacGAGACcuacuggaucgaGCGGAagaaguccGGCUGGCa -3'
miRNA:   3'- gaCCUGCUc---CUCUG------------CGCCU--------UCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.