miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 5' -51.1 NC_004084.1 + 43014 0.66 0.939542
Target:  5'- cGAgGAGUUCCccAACGAGAcgCAAgCGg -3'
miRNA:   3'- -CUgCUCAAGGccUUGCUCUa-GUUgGC- -5'
16453 5' -51.1 NC_004084.1 + 46720 0.66 0.939542
Target:  5'- cGACGAGUggUCGG-GCGAGcacAUCGAUCu -3'
miRNA:   3'- -CUGCUCAa-GGCCuUGCUC---UAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 12384 0.66 0.939542
Target:  5'- aGGCGAGggUCCGGuuAACGuccuGAUCGAUg- -3'
miRNA:   3'- -CUGCUCa-AGGCC--UUGCu---CUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 22335 0.66 0.939542
Target:  5'- cGACGAGgaacUCGaGGGCGAGAaCuACCGg -3'
miRNA:   3'- -CUGCUCaa--GGC-CUUGCUCUaGuUGGC- -5'
16453 5' -51.1 NC_004084.1 + 39773 0.66 0.934254
Target:  5'- cGACGccgaagaCGGcGACGAGGUCGGCCa -3'
miRNA:   3'- -CUGCucaag--GCC-UUGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 53572 0.66 0.93371
Target:  5'- uGugGAGgugCCGGAugugcucGCGAcGAUCGGCg- -3'
miRNA:   3'- -CugCUCaa-GGCCU-------UGCU-CUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 50133 0.66 0.922826
Target:  5'- cGCGAucgUCCGGAugACGAGGUCGuugUCGa -3'
miRNA:   3'- cUGCUca-AGGCCU--UGCUCUAGUu--GGC- -5'
16453 5' -51.1 NC_004084.1 + 9875 0.66 0.921014
Target:  5'- cGACGAGguucuugaacccugcCCGGGAgaaccCGAGAUCGaacccGCCGa -3'
miRNA:   3'- -CUGCUCaa-------------GGCCUU-----GCUCUAGU-----UGGC- -5'
16453 5' -51.1 NC_004084.1 + 8793 0.66 0.916686
Target:  5'- cGACGGagcCCGGcGACGAGAUCu-CCGu -3'
miRNA:   3'- -CUGCUcaaGGCC-UUGCUCUAGuuGGC- -5'
16453 5' -51.1 NC_004084.1 + 47909 0.66 0.916686
Target:  5'- uGAUGAGcUCaCGGAGCGuuAUCGugUGa -3'
miRNA:   3'- -CUGCUCaAG-GCCUUGCucUAGUugGC- -5'
16453 5' -51.1 NC_004084.1 + 49872 0.67 0.903559
Target:  5'- cGGCGAGUccUgCGGGACGAuGGgucuuguggcUCAACCu -3'
miRNA:   3'- -CUGCUCA--AgGCCUUGCU-CU----------AGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 18692 0.67 0.903559
Target:  5'- cGACGAGgaCUGGGGCcAGAagAGCUGg -3'
miRNA:   3'- -CUGCUCaaGGCCUUGcUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 35412 0.67 0.903559
Target:  5'- cGACGGGUcaucgucgucgaUCuCGcucGCGAGGUCGACCa -3'
miRNA:   3'- -CUGCUCA------------AG-GCcu-UGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 5041 0.67 0.903559
Target:  5'- cGACGAGggCCGGAucuUGuagcGGUCGGCgGa -3'
miRNA:   3'- -CUGCUCaaGGCCUu--GCu---CUAGUUGgC- -5'
16453 5' -51.1 NC_004084.1 + 21175 0.67 0.896577
Target:  5'- cGACGAGcgCCGGGACGcGGUUcuucucGCCc -3'
miRNA:   3'- -CUGCUCaaGGCCUUGCuCUAGu-----UGGc -5'
16453 5' -51.1 NC_004084.1 + 19630 0.67 0.889321
Target:  5'- aGCGAGUUCCGGcucGACGAcGAUgGcguCCa -3'
miRNA:   3'- cUGCUCAAGGCC---UUGCU-CUAgUu--GGc -5'
16453 5' -51.1 NC_004084.1 + 20074 0.67 0.881028
Target:  5'- cGACGAcg-CCGGAGCGAaccggaaGA-CGACCGu -3'
miRNA:   3'- -CUGCUcaaGGCCUUGCU-------CUaGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 30476 0.68 0.874006
Target:  5'- uACGAGgcgcugCCGGAcucCGAGAUCGAUuCGg -3'
miRNA:   3'- cUGCUCaa----GGCCUu--GCUCUAGUUG-GC- -5'
16453 5' -51.1 NC_004084.1 + 10553 0.68 0.857663
Target:  5'- gGACGAGUagcUCgGGGugGcuGUCGAUCGa -3'
miRNA:   3'- -CUGCUCA---AGgCCUugCucUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 36302 0.68 0.857663
Target:  5'- -cCGAGUaCCGGGACGcccuGAUCGAugcCCGu -3'
miRNA:   3'- cuGCUCAaGGCCUUGCu---CUAGUU---GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.