miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 5' -51.1 NC_004084.1 + 55365 0.76 0.449588
Target:  5'- cGACGAGUUCCucgaGGGugGcGAUCAucGCCGu -3'
miRNA:   3'- -CUGCUCAAGG----CCUugCuCUAGU--UGGC- -5'
16453 5' -51.1 NC_004084.1 + 53934 0.68 0.849124
Target:  5'- cACGAGggCCGGAAgGAGcUCGcgaaGCUGa -3'
miRNA:   3'- cUGCUCaaGGCCUUgCUCuAGU----UGGC- -5'
16453 5' -51.1 NC_004084.1 + 53572 0.66 0.93371
Target:  5'- uGugGAGgugCCGGAugugcucGCGAcGAUCGGCg- -3'
miRNA:   3'- -CugCUCaa-GGCCU-------UGCU-CUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 50133 0.66 0.922826
Target:  5'- cGCGAucgUCCGGAugACGAGGUCGuugUCGa -3'
miRNA:   3'- cUGCUca-AGGCCU--UGCUCUAGUu--GGC- -5'
16453 5' -51.1 NC_004084.1 + 49872 0.67 0.903559
Target:  5'- cGGCGAGUccUgCGGGACGAuGGgucuuguggcUCAACCu -3'
miRNA:   3'- -CUGCUCA--AgGCCUUGCU-CU----------AGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 47909 0.66 0.916686
Target:  5'- uGAUGAGcUCaCGGAGCGuuAUCGugUGa -3'
miRNA:   3'- -CUGCUCaAG-GCCUUGCucUAGUugGC- -5'
16453 5' -51.1 NC_004084.1 + 46720 0.66 0.939542
Target:  5'- cGACGAGUggUCGG-GCGAGcacAUCGAUCu -3'
miRNA:   3'- -CUGCUCAa-GGCCuUGCUC---UAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 45669 0.72 0.676693
Target:  5'- cGACGAGacggUCGGcgucGACGAGAUCGugCGc -3'
miRNA:   3'- -CUGCUCaa--GGCC----UUGCUCUAGUugGC- -5'
16453 5' -51.1 NC_004084.1 + 44463 0.71 0.709675
Target:  5'- cGACcGGUUCCGGAGCGAGuuugaGGCUc -3'
miRNA:   3'- -CUGcUCAAGGCCUUGCUCuag--UUGGc -5'
16453 5' -51.1 NC_004084.1 + 43014 0.66 0.939542
Target:  5'- cGAgGAGUUCCccAACGAGAcgCAAgCGg -3'
miRNA:   3'- -CUgCUCAAGGccUUGCUCUa-GUUgGC- -5'
16453 5' -51.1 NC_004084.1 + 42322 0.76 0.439679
Target:  5'- cGACGAccgUCGGGACGAGAUCGACg- -3'
miRNA:   3'- -CUGCUcaaGGCCUUGCUCUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 41712 0.72 0.632159
Target:  5'- cGAUGAGUUCCuGGACGAucgCGACCa -3'
miRNA:   3'- -CUGCUCAAGGcCUUGCUcuaGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 40992 1.11 0.002611
Target:  5'- cGACGAGUUCCGGAACGAGAUCAACCGg -3'
miRNA:   3'- -CUGCUCAAGGCCUUGCUCUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 40828 0.71 0.731291
Target:  5'- cGACGuccacGUUCCGGAGguCGAGGUCcccgaacuGGCCGu -3'
miRNA:   3'- -CUGCu----CAAGGCCUU--GCUCUAG--------UUGGC- -5'
16453 5' -51.1 NC_004084.1 + 39773 0.66 0.934254
Target:  5'- cGACGccgaagaCGGcGACGAGGUCGGCCa -3'
miRNA:   3'- -CUGCucaag--GCC-UUGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 38490 0.71 0.731291
Target:  5'- gGACGAG--CUGGu-CGAGAUCGGCCu -3'
miRNA:   3'- -CUGCUCaaGGCCuuGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 37219 0.71 0.687746
Target:  5'- uGACGAucuccuaCCGGGGCGAGAagAACCGc -3'
miRNA:   3'- -CUGCUcaa----GGCCUUGCUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 36302 0.68 0.857663
Target:  5'- -cCGAGUaCCGGGACGcccuGAUCGAugcCCGu -3'
miRNA:   3'- cuGCUCAaGGCCUUGCu---CUAGUU---GGC- -5'
16453 5' -51.1 NC_004084.1 + 36209 0.71 0.709675
Target:  5'- aGGCGGGgaaccucUCCGGucuccuCGAGggCAACCGg -3'
miRNA:   3'- -CUGCUCa------AGGCCuu----GCUCuaGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 36075 0.75 0.45962
Target:  5'- cGACGAGgaCCGcGACGAGGUC-GCCGu -3'
miRNA:   3'- -CUGCUCaaGGCcUUGCUCUAGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.