miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16466 5' -59.7 NC_004084.1 + 57412 0.79 0.069783
Target:  5'- cGACGUCGCCgGCGAGcUCGAGGUgGAc -3'
miRNA:   3'- -CUGCGGCGGgCGCUCuAGCUUCGgCU- -5'
16466 5' -59.7 NC_004084.1 + 55413 0.66 0.49577
Target:  5'- gGACGCUGuCCCG-GuAGucuaccCGAAGCCGAu -3'
miRNA:   3'- -CUGCGGC-GGGCgC-UCua----GCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 54814 0.67 0.475084
Target:  5'- uGACGCC-CCCGCGAuauucgcggaaacGGUCGAGGgaCCu- -3'
miRNA:   3'- -CUGCGGcGGGCGCU-------------CUAGCUUC--GGcu -5'
16466 5' -59.7 NC_004084.1 + 54253 0.74 0.153661
Target:  5'- aGCGCCGUCgGCGAGGUUGAGGUa-- -3'
miRNA:   3'- cUGCGGCGGgCGCUCUAGCUUCGgcu -5'
16466 5' -59.7 NC_004084.1 + 51325 0.69 0.342644
Target:  5'- aGGCGaucgagugCGCCCGCGAGAUCuucGUCGAc -3'
miRNA:   3'- -CUGCg-------GCGGGCGCUCUAGcuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 51185 0.7 0.319403
Target:  5'- cGCGCCGaUCGuCGAGGUCGgcGCUGGc -3'
miRNA:   3'- cUGCGGCgGGC-GCUCUAGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 47567 0.66 0.515842
Target:  5'- aGACGCCGUucgaggacguUCGCGAGcgCGguGgCGAc -3'
miRNA:   3'- -CUGCGGCG----------GGCGCUCuaGCuuCgGCU- -5'
16466 5' -59.7 NC_004084.1 + 45534 0.67 0.464421
Target:  5'- gGACGCCGggauggguuggCGCGAGGaccUCGAAGCgGAg -3'
miRNA:   3'- -CUGCGGCgg---------GCGCUCU---AGCUUCGgCU- -5'
16466 5' -59.7 NC_004084.1 + 45453 1.08 0.000509
Target:  5'- uGACGCCGCCCGCGAGAUCGAAGCCGAg -3'
miRNA:   3'- -CUGCGGCGGGCGCUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 44140 0.66 0.515842
Target:  5'- --aGCCGCUCGCGAcGA-CGAGGaCCu- -3'
miRNA:   3'- cugCGGCGGGCGCU-CUaGCUUC-GGcu -5'
16466 5' -59.7 NC_004084.1 + 41823 0.66 0.485867
Target:  5'- -cCGCCggGUCCGUagGGGGUgaCGAGGCCGAu -3'
miRNA:   3'- cuGCGG--CGGGCG--CUCUA--GCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 40432 0.69 0.334764
Target:  5'- --aGCUGUU--CGAGAUCGAGGCCGAg -3'
miRNA:   3'- cugCGGCGGgcGCUCUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 39099 0.67 0.476059
Target:  5'- aGACaGUCGCCCGUc-GAUCGucGUCGAc -3'
miRNA:   3'- -CUG-CGGCGGGCGcuCUAGCuuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 36946 0.75 0.141886
Target:  5'- cGAuCGCCGCCCuCGAGggCGA-GCCGGu -3'
miRNA:   3'- -CU-GCGGCGGGcGCUCuaGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 36162 0.74 0.170737
Target:  5'- uGACGCCGCauuCCGCGAGAUCuucaccguuGAAGCguuCGAc -3'
miRNA:   3'- -CUGCGGCG---GGCGCUCUAG---------CUUCG---GCU- -5'
16466 5' -59.7 NC_004084.1 + 35998 0.68 0.419431
Target:  5'- ---uCCGaCCGCGucGUCGGAGCCGAg -3'
miRNA:   3'- cugcGGCgGGCGCucUAGCUUCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 35429 0.7 0.319403
Target:  5'- cGAUcUCGCUCGCGAGGUCGAccaggacucGGUCGGc -3'
miRNA:   3'- -CUGcGGCGGGCGCUCUAGCU---------UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 35191 0.67 0.47997
Target:  5'- --gGCCGCUcgagcuccuccgaauCGuCGGGAUCGA-GCCGAc -3'
miRNA:   3'- cugCGGCGG---------------GC-GCUCUAGCUuCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 34990 0.69 0.350658
Target:  5'- -uCGCCGCCUGCGuGucagCGAucAGCUGGg -3'
miRNA:   3'- cuGCGGCGGGCGCuCua--GCU--UCGGCU- -5'
16466 5' -59.7 NC_004084.1 + 34302 0.69 0.357983
Target:  5'- aGACGCCGCCCaaaGAGAggaaacagcguagUCaGAGUCGAa -3'
miRNA:   3'- -CUGCGGCGGGcg-CUCU-------------AGcUUCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.