miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16503 3' -58.9 NC_004084.1 + 54130 0.66 0.546569
Target:  5'- cGGCGGGaCGUcGUGGACUuuGAgGAUg -3'
miRNA:   3'- -UCGUCCgGCGuCGCUUGAggCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 29168 0.66 0.52572
Target:  5'- cGCGGGCCGUucguccAGCGgAACUCgcccugcuCGGCGuCg -3'
miRNA:   3'- uCGUCCGGCG------UCGC-UUGAG--------GCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 6658 0.66 0.52572
Target:  5'- uGuCAGGCCGUagaagucgcuucGGCGcuGCUC-GACGACg -3'
miRNA:   3'- uC-GUCCGGCG------------UCGCu-UGAGgCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 57671 0.66 0.52572
Target:  5'- uGguGGUC-CAGCGc-CUCCGACGuCg -3'
miRNA:   3'- uCguCCGGcGUCGCuuGAGGCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 36883 0.66 0.52572
Target:  5'- -aCGGGCCuccucaagcuCGGCGAACUC-GGCGGCg -3'
miRNA:   3'- ucGUCCGGc---------GUCGCUUGAGgCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 13085 0.66 0.52572
Target:  5'- cGCAGa--GCAGCGAaaccuACUCCGgcACGGCu -3'
miRNA:   3'- uCGUCcggCGUCGCU-----UGAGGC--UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 35184 0.66 0.515408
Target:  5'- cGGUccGGGCCGCu-CGAGCUCCucCGAa -3'
miRNA:   3'- -UCG--UCCGGCGucGCUUGAGGcuGCUg -5'
16503 3' -58.9 NC_004084.1 + 19883 0.66 0.515408
Target:  5'- cGGCGGuGCCGcCGGUguagaacagGAACUUCGaACGAUg -3'
miRNA:   3'- -UCGUC-CGGC-GUCG---------CUUGAGGC-UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 23129 0.66 0.515408
Target:  5'- cAGCAGGCucuCGC-GCuGACUUCGcCGACu -3'
miRNA:   3'- -UCGUCCG---GCGuCGcUUGAGGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 28670 0.66 0.505178
Target:  5'- ----cGCCGCAGCGAGCUCaaCGuCGAg -3'
miRNA:   3'- ucgucCGGCGUCGCUUGAG--GCuGCUg -5'
16503 3' -58.9 NC_004084.1 + 37374 0.66 0.505178
Target:  5'- cGguGGCCGCcu--GACUUCGACGAa -3'
miRNA:   3'- uCguCCGGCGucgcUUGAGGCUGCUg -5'
16503 3' -58.9 NC_004084.1 + 22387 0.66 0.505178
Target:  5'- cAGgAGGUCGaacgcuacCGGaCGAucacgcuucucgGCUCCGACGACg -3'
miRNA:   3'- -UCgUCCGGC--------GUC-GCU------------UGAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 18558 0.66 0.505178
Target:  5'- gGGUGGGCCGaCGGgGAGaUCgCGACGGu -3'
miRNA:   3'- -UCGUCCGGC-GUCgCUUgAG-GCUGCUg -5'
16503 3' -58.9 NC_004084.1 + 49342 0.66 0.495037
Target:  5'- cGGCGuaCCGCGGCGAuCUCCGAaCGu- -3'
miRNA:   3'- -UCGUccGGCGUCGCUuGAGGCU-GCug -5'
16503 3' -58.9 NC_004084.1 + 3584 0.66 0.495037
Target:  5'- gAGCGGGCgacCGCGaCGAACguccUCCaGACGGCc -3'
miRNA:   3'- -UCGUCCG---GCGUcGCUUG----AGG-CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 42648 0.67 0.484989
Target:  5'- -cCAGuCgGCGGCGcAgUCCGACGACg -3'
miRNA:   3'- ucGUCcGgCGUCGCuUgAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 51752 0.67 0.484989
Target:  5'- gAGCAGcGCCGaAGCGA-CUUCuACGGCc -3'
miRNA:   3'- -UCGUC-CGGCgUCGCUuGAGGcUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 28532 0.67 0.484989
Target:  5'- uGCGuGGCCGgGGaCGu-CUuuGACGACg -3'
miRNA:   3'- uCGU-CCGGCgUC-GCuuGAggCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 355 0.67 0.47504
Target:  5'- cAGguGGCCucucgaaacuguGCcGCGAGC-CCGGgGACg -3'
miRNA:   3'- -UCguCCGG------------CGuCGCUUGaGGCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 29059 0.67 0.465194
Target:  5'- uGGCAGGCCGCGaccGCccGCUCgGG-GGCg -3'
miRNA:   3'- -UCGUCCGGCGU---CGcuUGAGgCUgCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.