miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 58180 1.11 0.003519
Target:  5'- cUCCGAAAAGCACCGAUGAACGACGACu -3'
miRNA:   3'- -AGGCUUUUCGUGGCUACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 58059 0.76 0.530669
Target:  5'- cCCGguAGGCGCCG-UGuuCGACGGCg -3'
miRNA:   3'- aGGCuuUUCGUGGCuACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 57841 0.72 0.732384
Target:  5'- aCCGAAGAGCACau-----CGACGACa -3'
miRNA:   3'- aGGCUUUUCGUGgcuacuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 57631 0.66 0.970936
Target:  5'- cUCGAccaacacaAGGGCGaCGAUGAAuCGugGACg -3'
miRNA:   3'- aGGCU--------UUUCGUgGCUACUU-GCugCUG- -5'
16505 5' -49.5 NC_004084.1 + 57530 0.69 0.884636
Target:  5'- gCCGAc-AGCgauACCGAUuccGACGGCGACg -3'
miRNA:   3'- aGGCUuuUCG---UGGCUAc--UUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 57010 0.66 0.970936
Target:  5'- gCCGAGAauGGCgacGCCGGUGAuaaugagUGAUGAUa -3'
miRNA:   3'- aGGCUUU--UCG---UGGCUACUu------GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56977 0.81 0.287614
Target:  5'- gUCCGAgcgaagGAGGCgGCCGA-GGACGGCGACg -3'
miRNA:   3'- -AGGCU------UUUCG-UGGCUaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56419 0.71 0.770779
Target:  5'- aUCCGuucagcacagcGGCACCGucgcGAACGACGAUc -3'
miRNA:   3'- -AGGCuuu--------UCGUGGCua--CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 56180 0.68 0.898022
Target:  5'- aCCGAGGAGaucuccgcgcugGCCGAagcGAGCGGCGAg -3'
miRNA:   3'- aGGCUUUUCg-----------UGGCUa--CUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 56065 0.68 0.919534
Target:  5'- cUUCGAGGA-CGaCGcgGAACGACGACu -3'
miRNA:   3'- -AGGCUUUUcGUgGCuaCUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 55540 0.67 0.94221
Target:  5'- cUCCGcGAucGCGCUGGcUGGccGCGACGAa -3'
miRNA:   3'- -AGGC-UUuuCGUGGCU-ACU--UGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 55348 0.66 0.963712
Target:  5'- aUCGAGAucGCGCCaaacagcaaggagGAUGA-CGACGAUg -3'
miRNA:   3'- aGGCUUUu-CGUGG-------------CUACUuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 55038 0.66 0.960262
Target:  5'- cUCGAGGAGCuccgccaucuucACCGGguUGAACGGUGGCc -3'
miRNA:   3'- aGGCUUUUCG------------UGGCU--ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 53112 0.67 0.94221
Target:  5'- cUCGAcGGAGcCGCCGAgUGGAUGGCGGa -3'
miRNA:   3'- aGGCU-UUUC-GUGGCU-ACUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 52370 0.67 0.953582
Target:  5'- aCCGAccuGGUAUCGAauccacucgaagacaUGAuGCGGCGGCa -3'
miRNA:   3'- aGGCUuu-UCGUGGCU---------------ACU-UGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 49869 0.67 0.931459
Target:  5'- aUCCGgcGAGUcCUGcgGGACGAUGGg -3'
miRNA:   3'- -AGGCuuUUCGuGGCuaCUUGCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 49138 0.68 0.913131
Target:  5'- gCCGGAccAGGCGacguUCGAUgcguucacGAACGACGACc -3'
miRNA:   3'- aGGCUU--UUCGU----GGCUA--------CUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48875 0.7 0.814976
Target:  5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3'
miRNA:   3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 48641 0.68 0.899453
Target:  5'- gUCGAAcGGCcgcaGCCGAUGAugGAagcgggcucauuCGACa -3'
miRNA:   3'- aGGCUUuUCG----UGGCUACUugCU------------GCUG- -5'
16505 5' -49.5 NC_004084.1 + 48012 0.66 0.970936
Target:  5'- -gCGAGAuGGUcgaCGAccUGGACGACGACg -3'
miRNA:   3'- agGCUUU-UCGug-GCU--ACUUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.