miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16505 5' -49.5 NC_004084.1 + 45078 0.66 0.970936
Target:  5'- aUCUGu--GGCG-CGAUGAACGACa-- -3'
miRNA:   3'- -AGGCuuuUCGUgGCUACUUGCUGcug -5'
16505 5' -49.5 NC_004084.1 + 8354 0.68 0.913131
Target:  5'- uUUCG-AGAGCAaucgccacCCGGUGAGgGACGAg -3'
miRNA:   3'- -AGGCuUUUCGU--------GGCUACUUgCUGCUg -5'
16505 5' -49.5 NC_004084.1 + 35787 0.69 0.892185
Target:  5'- gCCG-GAGGCGCCGG-GAAgGACGcGCu -3'
miRNA:   3'- aGGCuUUUCGUGGCUaCUUgCUGC-UG- -5'
16505 5' -49.5 NC_004084.1 + 58059 0.76 0.530669
Target:  5'- cCCGguAGGCGCCG-UGuuCGACGGCg -3'
miRNA:   3'- aGGCuuUUCGUGGCuACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 36016 0.66 0.970617
Target:  5'- gCCGAGAAGCGugaucguCCGGU-AGCGuuCGACc -3'
miRNA:   3'- aGGCUUUUCGU-------GGCUAcUUGCu-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 9717 0.66 0.967637
Target:  5'- gCCGA----CGCCGAUGc-CGGCGGCu -3'
miRNA:   3'- aGGCUuuucGUGGCUACuuGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 12782 0.66 0.967637
Target:  5'- aUCCGAGA--CGCCGuc-GACGAcCGACa -3'
miRNA:   3'- -AGGCUUUucGUGGCuacUUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 5039 0.66 0.967637
Target:  5'- cCCGAcGAGgGCCGGaucuUGuAGCGGuCGGCg -3'
miRNA:   3'- aGGCUuUUCgUGGCU----AC-UUGCU-GCUG- -5'
16505 5' -49.5 NC_004084.1 + 55038 0.66 0.960262
Target:  5'- cUCGAGGAGCuccgccaucuucACCGGguUGAACGGUGGCc -3'
miRNA:   3'- aGGCUUUUCG------------UGGCU--ACUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 3456 0.67 0.931459
Target:  5'- gUCGGAucgcGAGCGCCGGgggaauacgGAACGGCGu- -3'
miRNA:   3'- aGGCUU----UUCGUGGCUa--------CUUGCUGCug -5'
16505 5' -49.5 NC_004084.1 + 29236 0.66 0.95617
Target:  5'- gCCGAgcAGGGCGaguuCCGcUGGACGaACGGCc -3'
miRNA:   3'- aGGCU--UUUCGU----GGCuACUUGC-UGCUG- -5'
16505 5' -49.5 NC_004084.1 + 34338 0.66 0.964082
Target:  5'- gUCGAAGAGCGCacuucgCGGcaUGAugGACGcCg -3'
miRNA:   3'- aGGCUUUUCGUG------GCU--ACUugCUGCuG- -5'
16505 5' -49.5 NC_004084.1 + 30279 0.66 0.970936
Target:  5'- gCCGA--AGUAUCGA--GACGAgGACg -3'
miRNA:   3'- aGGCUuuUCGUGGCUacUUGCUgCUG- -5'
16505 5' -49.5 NC_004084.1 + 25361 0.66 0.95617
Target:  5'- uUCCGAAAcGgAUCGAcgUGAGCGcCGAg -3'
miRNA:   3'- -AGGCUUUuCgUGGCU--ACUUGCuGCUg -5'
16505 5' -49.5 NC_004084.1 + 36530 0.66 0.970936
Target:  5'- aCCGAGA--CGCCGAUcgcgacaacGGuauCGACGACg -3'
miRNA:   3'- aGGCUUUucGUGGCUA---------CUu--GCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 3780 0.66 0.967637
Target:  5'- gCCGuu--GCGCgGGUuGACGACGAUu -3'
miRNA:   3'- aGGCuuuuCGUGgCUAcUUGCUGCUG- -5'
16505 5' -49.5 NC_004084.1 + 19436 0.67 0.936981
Target:  5'- uUCCGAuAAGGCGgcuugucgacUCGGUGAAUGugGGu -3'
miRNA:   3'- -AGGCU-UUUCGU----------GGCUACUUGCugCUg -5'
16505 5' -49.5 NC_004084.1 + 48641 0.68 0.899453
Target:  5'- gUCGAAcGGCcgcaGCCGAUGAugGAagcgggcucauuCGACa -3'
miRNA:   3'- aGGCUUuUCG----UGGCUACUugCU------------GCUG- -5'
16505 5' -49.5 NC_004084.1 + 27262 0.66 0.970936
Target:  5'- cCCGGAuguCGCCGAaaggugUGAACGAUGuCg -3'
miRNA:   3'- aGGCUUuucGUGGCU------ACUUGCUGCuG- -5'
16505 5' -49.5 NC_004084.1 + 16926 0.66 0.967637
Target:  5'- gCCGGGugcgguucGGCAUCGgcGGGCGucGCGACg -3'
miRNA:   3'- aGGCUUu-------UCGUGGCuaCUUGC--UGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.