miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16506 3' -51.5 NC_004084.1 + 33441 0.66 0.901013
Target:  5'- cGUCGAuGAaGGCGAUgauGGGCugGGCGAa -3'
miRNA:   3'- -UAGCU-CUgCCGUUG---UUCGugUUGCUg -5'
16506 3' -51.5 NC_004084.1 + 51397 0.66 0.901013
Target:  5'- -aCGAGAUGGCGGCcgacgccgucgAGGCcuucgAgGGCGACa -3'
miRNA:   3'- uaGCUCUGCCGUUG-----------UUCG-----UgUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 42646 0.66 0.901013
Target:  5'- uUCcAGuCGGCGGCGcAGUcCGACGACg -3'
miRNA:   3'- uAGcUCuGCCGUUGU-UCGuGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 36907 0.66 0.901013
Target:  5'- cUCGAGGCGuucuGCggUGAGC-CuACGACg -3'
miRNA:   3'- uAGCUCUGC----CGuuGUUCGuGuUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 47654 0.66 0.901013
Target:  5'- cGUCGAGGuCGGCGACGccccCACuGGCGAg -3'
miRNA:   3'- -UAGCUCU-GCCGUUGUuc--GUG-UUGCUg -5'
16506 3' -51.5 NC_004084.1 + 52056 0.66 0.898873
Target:  5'- cGUCGGGAUGGacuaucACAAGCAgCGgauggagaacgcucGCGACg -3'
miRNA:   3'- -UAGCUCUGCCgu----UGUUCGU-GU--------------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 58383 0.66 0.893779
Target:  5'- aAUCGGccGACGGCGggucuGCAcGCACgGAUGGCu -3'
miRNA:   3'- -UAGCU--CUGCCGU-----UGUuCGUG-UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 58018 0.66 0.893779
Target:  5'- gAUCGAcGACGucuGCGACAucgGCGGCGACg -3'
miRNA:   3'- -UAGCU-CUGC---CGUUGUucgUGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 10382 0.66 0.893779
Target:  5'- aGUCGAG-CaGGCGAuCGAGCGCGAaGAa -3'
miRNA:   3'- -UAGCUCuG-CCGUU-GUUCGUGUUgCUg -5'
16506 3' -51.5 NC_004084.1 + 12532 0.66 0.893779
Target:  5'- cUCGAGA--GCuuGCAGGUgaGCGACGACg -3'
miRNA:   3'- uAGCUCUgcCGu-UGUUCG--UGUUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 48569 0.66 0.893779
Target:  5'- gGUCGAGGCGaau-CAGGaCGCAGcCGACa -3'
miRNA:   3'- -UAGCUCUGCcguuGUUC-GUGUU-GCUG- -5'
16506 3' -51.5 NC_004084.1 + 22174 0.66 0.889303
Target:  5'- cUCGAGGacgucgacccgguaGGCGAguucucCGAGCACAACGuCa -3'
miRNA:   3'- uAGCUCUg-------------CCGUU------GUUCGUGUUGCuG- -5'
16506 3' -51.5 NC_004084.1 + 47315 0.66 0.889303
Target:  5'- uUCGAGccgcgaACGGCGAucucgucgccgaccuCAAGCACAuguucgucgGCGGCc -3'
miRNA:   3'- uAGCUC------UGCCGUU---------------GUUCGUGU---------UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 11089 0.66 0.886262
Target:  5'- cUUGAGGuCGGCGACGAGauCGCcguucGCGGCu -3'
miRNA:   3'- uAGCUCU-GCCGUUGUUC--GUGu----UGCUG- -5'
16506 3' -51.5 NC_004084.1 + 54160 0.66 0.886262
Target:  5'- cGUCGA-AgGGCGAgAAGCAacgaGGCGACc -3'
miRNA:   3'- -UAGCUcUgCCGUUgUUCGUg---UUGCUG- -5'
16506 3' -51.5 NC_004084.1 + 12082 0.66 0.886262
Target:  5'- aGUUG-GGCGaGCGACGAGgACAugGGa -3'
miRNA:   3'- -UAGCuCUGC-CGUUGUUCgUGUugCUg -5'
16506 3' -51.5 NC_004084.1 + 10018 0.66 0.878467
Target:  5'- -cCGAGAUGGCGGCcacgauGCcGCGuCGACg -3'
miRNA:   3'- uaGCUCUGCCGUUGuu----CG-UGUuGCUG- -5'
16506 3' -51.5 NC_004084.1 + 47575 0.66 0.878467
Target:  5'- uUCGAgGACGuucGCGAGCGCggUGGCg -3'
miRNA:   3'- uAGCU-CUGCcguUGUUCGUGuuGCUG- -5'
16506 3' -51.5 NC_004084.1 + 21158 0.66 0.878467
Target:  5'- uGUCGAGAgCGaGUccucGACGAGCGCcGgGACg -3'
miRNA:   3'- -UAGCUCU-GC-CG----UUGUUCGUGuUgCUG- -5'
16506 3' -51.5 NC_004084.1 + 44778 0.66 0.878467
Target:  5'- -aCGAGACGGUcgagauGGgAAGuCACGACGGu -3'
miRNA:   3'- uaGCUCUGCCG------UUgUUC-GUGUUGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.