Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16593 | 5' | -42.4 | NC_004117.1 | + | 29550 | 0.66 | 1 |
Target: 5'- uUCGCACGccuacggcaaauuuGUGAggcUUUAcgGCGCACg -3' miRNA: 3'- -AGCGUGU--------------UAUUaa-AAGUaaCGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 95494 | 0.66 | 1 |
Target: 5'- gCGCACAAUgccuGAUagUCAUUGUcugaauuGCGCa -3' miRNA: 3'- aGCGUGUUA----UUAaaAGUAACG-------CGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 17741 | 0.66 | 1 |
Target: 5'- -gGCuaaAGUGGUUUga--UGCGCGCCa -3' miRNA: 3'- agCGug-UUAUUAAAaguaACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 38383 | 0.66 | 1 |
Target: 5'- aUCGCAUuuGAUGAguaacgUUCGaugugaUGCGCACg -3' miRNA: 3'- -AGCGUG--UUAUUaa----AAGUa-----ACGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 103272 | 0.66 | 1 |
Target: 5'- -aGCGCGAgcaauuuugAAUUUUCGaaacgauucuUUGCGCAgCg -3' miRNA: 3'- agCGUGUUa--------UUAAAAGU----------AACGCGUgG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 150213 | 0.66 | 1 |
Target: 5'- aCGCAUAAcGGUcaUCAaaaUGgGCACCg -3' miRNA: 3'- aGCGUGUUaUUAaaAGUa--ACgCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 143398 | 0.66 | 1 |
Target: 5'- gCGUuucaGCAGUAAU--UUAUUGCGUcCCa -3' miRNA: 3'- aGCG----UGUUAUUAaaAGUAACGCGuGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 78237 | 0.66 | 1 |
Target: 5'- -aGCucuuCGAUGGUgcauugUUUGUcGCGCGCCa -3' miRNA: 3'- agCGu---GUUAUUAa-----AAGUAaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 92897 | 0.66 | 1 |
Target: 5'- aUCGCGCcaaaAAUAcag-UUGUUGCGCugUg -3' miRNA: 3'- -AGCGUG----UUAUuaaaAGUAACGCGugG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 70527 | 0.66 | 1 |
Target: 5'- -aGUACAGccAAUUUUCGUUGUGaGCUa -3' miRNA: 3'- agCGUGUUa-UUAAAAGUAACGCgUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 62644 | 0.66 | 1 |
Target: 5'- cUGUGCAAUAGUUgcuacauuUUCAaUGCGUAUUg -3' miRNA: 3'- aGCGUGUUAUUAA--------AAGUaACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 135612 | 0.67 | 1 |
Target: 5'- gUGCGCAAUGAaaaUUAUUGUGCGa- -3' miRNA: 3'- aGCGUGUUAUUaaaAGUAACGCGUgg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 18506 | 0.67 | 1 |
Target: 5'- gUUGCGCAG--------AUUGCGCACUa -3' miRNA: 3'- -AGCGUGUUauuaaaagUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 40915 | 0.67 | 1 |
Target: 5'- uUCaCGCGAUAAUaUUCAUUaCGaCACCu -3' miRNA: 3'- -AGcGUGUUAUUAaAAGUAAcGC-GUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 36500 | 0.67 | 1 |
Target: 5'- -gGCACAAUGGUUgugcaauacUUGUUGgGCGCa -3' miRNA: 3'- agCGUGUUAUUAAa--------AGUAACgCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 36003 | 0.67 | 1 |
Target: 5'- gUCGCGgacagguCAAUAAUUcgCGUUGgGCuCCg -3' miRNA: 3'- -AGCGU-------GUUAUUAAaaGUAACgCGuGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 157505 | 0.67 | 1 |
Target: 5'- aCGUugAAccGUgg-CAUUGCGCAUUa -3' miRNA: 3'- aGCGugUUauUAaaaGUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 157109 | 0.67 | 1 |
Target: 5'- -aGUACAAUA-------UUGCGCGCCc -3' miRNA: 3'- agCGUGUUAUuaaaaguAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 46158 | 0.67 | 1 |
Target: 5'- aCGCGCA--GAg--UgAUUGCGCuACCc -3' miRNA: 3'- aGCGUGUuaUUaaaAgUAACGCG-UGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 96395 | 0.67 | 1 |
Target: 5'- -gGCACAA------UCGUUGCGCAa- -3' miRNA: 3'- agCGUGUUauuaaaAGUAACGCGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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