miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16593 5' -42.4 NC_004117.1 + 135430 1.17 0.024292
Target:  5'- gUCGCACAAUAAUUUUCAUUGCGCACCg -3'
miRNA:   3'- -AGCGUGUUAUUAAAAGUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 103272 0.66 1
Target:  5'- -aGCGCGAgcaauuuugAAUUUUCGaaacgauucuUUGCGCAgCg -3'
miRNA:   3'- agCGUGUUa--------UUAAAAGU----------AACGCGUgG- -5'
16593 5' -42.4 NC_004117.1 + 95494 0.66 1
Target:  5'- gCGCACAAUgccuGAUagUCAUUGUcugaauuGCGCa -3'
miRNA:   3'- aGCGUGUUA----UUAaaAGUAACG-------CGUGg -5'
16593 5' -42.4 NC_004117.1 + 17741 0.66 1
Target:  5'- -gGCuaaAGUGGUUUga--UGCGCGCCa -3'
miRNA:   3'- agCGug-UUAUUAAAaguaACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 67915 0.7 0.999995
Target:  5'- aUUGCACA--AAUg---AUUGUGCACCa -3'
miRNA:   3'- -AGCGUGUuaUUAaaagUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 146637 0.7 0.999995
Target:  5'- aUUGC-CGgcAUGAUUUaCGUUgGCGCACCu -3'
miRNA:   3'- -AGCGuGU--UAUUAAAaGUAA-CGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 27798 0.69 0.999999
Target:  5'- aUGUACAGUGcaa-UCAcuUUGCGCACg -3'
miRNA:   3'- aGCGUGUUAUuaaaAGU--AACGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 125564 0.69 0.999999
Target:  5'- gUGCACA---AUUUUCAUaGUGUAUCa -3'
miRNA:   3'- aGCGUGUuauUAAAAGUAaCGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 36003 0.67 1
Target:  5'- gUCGCGgacagguCAAUAAUUcgCGUUGgGCuCCg -3'
miRNA:   3'- -AGCGU-------GUUAUUAAaaGUAACgCGuGG- -5'
16593 5' -42.4 NC_004117.1 + 36500 0.67 1
Target:  5'- -gGCACAAUGGUUgugcaauacUUGUUGgGCGCa -3'
miRNA:   3'- agCGUGUUAUUAAa--------AGUAACgCGUGg -5'
16593 5' -42.4 NC_004117.1 + 826 0.68 1
Target:  5'- uUCGUACAAUAGUUUUUguauaguGUcucuaucguugguggUGUGCugCg -3'
miRNA:   3'- -AGCGUGUUAUUAAAAG-------UA---------------ACGCGugG- -5'
16593 5' -42.4 NC_004117.1 + 51607 0.72 0.999865
Target:  5'- aCGCGCAAUGAaUUaCAcUGUaGCGCCa -3'
miRNA:   3'- aGCGUGUUAUUaAAaGUaACG-CGUGG- -5'
16593 5' -42.4 NC_004117.1 + 40915 0.67 1
Target:  5'- uUCaCGCGAUAAUaUUCAUUaCGaCACCu -3'
miRNA:   3'- -AGcGUGUUAUUAaAAGUAAcGC-GUGG- -5'
16593 5' -42.4 NC_004117.1 + 72120 0.7 0.999978
Target:  5'- aCGCGCGAUGcg--UCGUgcugGUGCGCg -3'
miRNA:   3'- aGCGUGUUAUuaaaAGUAa---CGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 32007 0.68 1
Target:  5'- aUCGCACAgaagGUGAg--UCGUcggGCGUggccGCCa -3'
miRNA:   3'- -AGCGUGU----UAUUaaaAGUAa--CGCG----UGG- -5'
16593 5' -42.4 NC_004117.1 + 96395 0.67 1
Target:  5'- -gGCACAA------UCGUUGCGCAa- -3'
miRNA:   3'- agCGUGUUauuaaaAGUAACGCGUgg -5'
16593 5' -42.4 NC_004117.1 + 38383 0.66 1
Target:  5'- aUCGCAUuuGAUGAguaacgUUCGaugugaUGCGCACg -3'
miRNA:   3'- -AGCGUG--UUAUUaa----AAGUa-----ACGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 32884 0.7 0.999989
Target:  5'- aUGUACAuGUAGUUUUCG-UGCGaCACUc -3'
miRNA:   3'- aGCGUGU-UAUUAAAAGUaACGC-GUGG- -5'
16593 5' -42.4 NC_004117.1 + 19099 0.69 0.999997
Target:  5'- cCGCGCAAUAAggUUCGUcGgGUuuCCa -3'
miRNA:   3'- aGCGUGUUAUUaaAAGUAaCgCGu-GG- -5'
16593 5' -42.4 NC_004117.1 + 18506 0.67 1
Target:  5'- gUUGCGCAG--------AUUGCGCACUa -3'
miRNA:   3'- -AGCGUGUUauuaaaagUAACGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.