Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16593 | 5' | -42.4 | NC_004117.1 | + | 826 | 0.68 | 1 |
Target: 5'- uUCGUACAAUAGUUUUUguauaguGUcucuaucguugguggUGUGCugCg -3' miRNA: 3'- -AGCGUGUUAUUAAAAG-------UA---------------ACGCGugG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 12327 | 0.7 | 0.999984 |
Target: 5'- -aGCGCAAUGGUgaauagCug-GCGCGCUa -3' miRNA: 3'- agCGUGUUAUUAaaa---GuaaCGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 17741 | 0.66 | 1 |
Target: 5'- -gGCuaaAGUGGUUUga--UGCGCGCCa -3' miRNA: 3'- agCGug-UUAUUAAAaguaACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 18506 | 0.67 | 1 |
Target: 5'- gUUGCGCAG--------AUUGCGCACUa -3' miRNA: 3'- -AGCGUGUUauuaaaagUAACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 19099 | 0.69 | 0.999997 |
Target: 5'- cCGCGCAAUAAggUUCGUcGgGUuuCCa -3' miRNA: 3'- aGCGUGUUAUUaaAAGUAaCgCGu-GG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 22831 | 0.69 | 0.999996 |
Target: 5'- gCGUGCAAgu-UUUUUAaauguUUGCGCAUCg -3' miRNA: 3'- aGCGUGUUauuAAAAGU-----AACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 27798 | 0.69 | 0.999999 |
Target: 5'- aUGUACAGUGcaa-UCAcuUUGCGCACg -3' miRNA: 3'- aGCGUGUUAUuaaaAGU--AACGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 29550 | 0.66 | 1 |
Target: 5'- uUCGCACGccuacggcaaauuuGUGAggcUUUAcgGCGCACg -3' miRNA: 3'- -AGCGUGU--------------UAUUaa-AAGUaaCGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 32007 | 0.68 | 1 |
Target: 5'- aUCGCACAgaagGUGAg--UCGUcggGCGUggccGCCa -3' miRNA: 3'- -AGCGUGU----UAUUaaaAGUAa--CGCG----UGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 32884 | 0.7 | 0.999989 |
Target: 5'- aUGUACAuGUAGUUUUCG-UGCGaCACUc -3' miRNA: 3'- aGCGUGU-UAUUAAAAGUaACGC-GUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 33743 | 0.7 | 0.999978 |
Target: 5'- -gGCAaaucaAAUGAUcgcUCAUcaUGCGCACCa -3' miRNA: 3'- agCGUg----UUAUUAaa-AGUA--ACGCGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 35011 | 0.71 | 0.999958 |
Target: 5'- cUUGCGCAGUGGg---CGUUuGCGCAUg -3' miRNA: 3'- -AGCGUGUUAUUaaaaGUAA-CGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 36003 | 0.67 | 1 |
Target: 5'- gUCGCGgacagguCAAUAAUUcgCGUUGgGCuCCg -3' miRNA: 3'- -AGCGU-------GUUAUUAAaaGUAACgCGuGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 36500 | 0.67 | 1 |
Target: 5'- -gGCACAAUGGUUgugcaauacUUGUUGgGCGCa -3' miRNA: 3'- agCGUGUUAUUAAa--------AGUAACgCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 38383 | 0.66 | 1 |
Target: 5'- aUCGCAUuuGAUGAguaacgUUCGaugugaUGCGCACg -3' miRNA: 3'- -AGCGUG--UUAUUaa----AAGUa-----ACGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 40915 | 0.67 | 1 |
Target: 5'- uUCaCGCGAUAAUaUUCAUUaCGaCACCu -3' miRNA: 3'- -AGcGUGUUAUUAaAAGUAAcGC-GUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 46158 | 0.67 | 1 |
Target: 5'- aCGCGCA--GAg--UgAUUGCGCuACCc -3' miRNA: 3'- aGCGUGUuaUUaaaAgUAACGCG-UGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 50717 | 0.73 | 0.999705 |
Target: 5'- uUCGUAUGAUAAUUUUuCAUUaCGCGCg -3' miRNA: 3'- -AGCGUGUUAUUAAAA-GUAAcGCGUGg -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 51607 | 0.72 | 0.999865 |
Target: 5'- aCGCGCAAUGAaUUaCAcUGUaGCGCCa -3' miRNA: 3'- aGCGUGUUAUUaAAaGUaACG-CGUGG- -5' |
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16593 | 5' | -42.4 | NC_004117.1 | + | 51789 | 0.79 | 0.96798 |
Target: 5'- gCGCuACAGUGuaaUUCAUUGCGCGuCCa -3' miRNA: 3'- aGCG-UGUUAUuaaAAGUAACGCGU-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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