miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16593 5' -42.4 NC_004117.1 + 135430 1.17 0.024292
Target:  5'- gUCGCACAAUAAUUUUCAUUGCGCACCg -3'
miRNA:   3'- -AGCGUGUUAUUAAAAGUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 69467 0.83 0.878284
Target:  5'- gUGUACAGUuuggcaagUUCGUUGCGCGCCu -3'
miRNA:   3'- aGCGUGUUAuuaa----AAGUAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 51789 0.79 0.96798
Target:  5'- gCGCuACAGUGuaaUUCAUUGCGCGuCCa -3'
miRNA:   3'- aGCG-UGUUAUuaaAAGUAACGCGU-GG- -5'
16593 5' -42.4 NC_004117.1 + 137416 0.78 0.981905
Target:  5'- -aGCGCAAauGUUUUCAgugUGCGCAUUa -3'
miRNA:   3'- agCGUGUUauUAAAAGUa--ACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 132219 0.74 0.998578
Target:  5'- cCGCAUcGUGucgUUCGUgaUGCGUACCa -3'
miRNA:   3'- aGCGUGuUAUuaaAAGUA--ACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 69949 0.73 0.999521
Target:  5'- -aGCugGGUAAcgUUCA-UGCGCAUCu -3'
miRNA:   3'- agCGugUUAUUaaAAGUaACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 74377 0.73 0.999521
Target:  5'- cUGUugGuuGUAAUUUUUAUagUGUGCACCg -3'
miRNA:   3'- aGCGugU--UAUUAAAAGUA--ACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 50717 0.73 0.999705
Target:  5'- uUCGUAUGAUAAUUUUuCAUUaCGCGCg -3'
miRNA:   3'- -AGCGUGUUAUUAAAA-GUAAcGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 71800 0.72 0.999771
Target:  5'- cCGCAgAAUAAUUggaacCGUUGCGCgacaagaguGCCg -3'
miRNA:   3'- aGCGUgUUAUUAAaa---GUAACGCG---------UGG- -5'
16593 5' -42.4 NC_004117.1 + 51607 0.72 0.999865
Target:  5'- aCGCGCAAUGAaUUaCAcUGUaGCGCCa -3'
miRNA:   3'- aGCGUGUUAUUaAAaGUaACG-CGUGG- -5'
16593 5' -42.4 NC_004117.1 + 71191 0.71 0.999954
Target:  5'- uUCGUACAAUucg--UCGUUGCGauuguuaaaucuaaCACCg -3'
miRNA:   3'- -AGCGUGUUAuuaaaAGUAACGC--------------GUGG- -5'
16593 5' -42.4 NC_004117.1 + 35011 0.71 0.999958
Target:  5'- cUUGCGCAGUGGg---CGUUuGCGCAUg -3'
miRNA:   3'- -AGCGUGUUAUUaaaaGUAA-CGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 76683 0.71 0.999959
Target:  5'- gUCGCACAAUAAauuauaaaagaAUUGCGCAa- -3'
miRNA:   3'- -AGCGUGUUAUUaaaag------UAACGCGUgg -5'
16593 5' -42.4 NC_004117.1 + 132974 0.7 0.999977
Target:  5'- gUCGCGCAcaaucguccacagAUAgaacAUUUugUCGUUGCGCAUa -3'
miRNA:   3'- -AGCGUGU-------------UAU----UAAA--AGUAACGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 72120 0.7 0.999978
Target:  5'- aCGCGCGAUGcg--UCGUgcugGUGCGCg -3'
miRNA:   3'- aGCGUGUUAUuaaaAGUAa---CGCGUGg -5'
16593 5' -42.4 NC_004117.1 + 33743 0.7 0.999978
Target:  5'- -gGCAaaucaAAUGAUcgcUCAUcaUGCGCACCa -3'
miRNA:   3'- agCGUg----UUAUUAaa-AGUA--ACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 12327 0.7 0.999984
Target:  5'- -aGCGCAAUGGUgaauagCug-GCGCGCUa -3'
miRNA:   3'- agCGUGUUAUUAaaa---GuaaCGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 32884 0.7 0.999989
Target:  5'- aUGUACAuGUAGUUUUCG-UGCGaCACUc -3'
miRNA:   3'- aGCGUGU-UAUUAAAAGUaACGC-GUGG- -5'
16593 5' -42.4 NC_004117.1 + 148667 0.7 0.999989
Target:  5'- cUUGCACGAUGGUgaaaagAUUGUGUAUCg -3'
miRNA:   3'- -AGCGUGUUAUUAaaag--UAACGCGUGG- -5'
16593 5' -42.4 NC_004117.1 + 131957 0.7 0.999992
Target:  5'- aUCGCACAAUAAUUcUUCAgaaUGgGCu-- -3'
miRNA:   3'- -AGCGUGUUAUUAA-AAGUa--ACgCGugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.