miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 3' -51.9 NC_004156.1 + 216883 0.66 0.995226
Target:  5'- --gGCCAccgACUauGGuGCCAGUACCGa -3'
miRNA:   3'- ugaUGGUca-UGA--UCuCGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 109169 0.66 0.994472
Target:  5'- -aUGCCGGUGCcgagagUAGAGCCccAGUcUCGGc -3'
miRNA:   3'- ugAUGGUCAUG------AUCUCGG--UCAuGGCC- -5'
16669 3' -51.9 NC_004156.1 + 52131 0.67 0.993624
Target:  5'- cACUGCUAGga-UAGAuuacauuggugGCCacGGUACCGGu -3'
miRNA:   3'- -UGAUGGUCaugAUCU-----------CGG--UCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 81979 0.67 0.992675
Target:  5'- -gUGCCAGcUGC-AGAGCCA--ACUGGa -3'
miRNA:   3'- ugAUGGUC-AUGaUCUCGGUcaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 206077 0.67 0.991616
Target:  5'- -gUACCGGUGCUgucacuGGAGCCAauaugagcaaUACUGGg -3'
miRNA:   3'- ugAUGGUCAUGA------UCUCGGUc---------AUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 217285 0.67 0.991616
Target:  5'- aACUACCAGUACUugaaugcacAGAGCUAcaacauuUGCCa- -3'
miRNA:   3'- -UGAUGGUCAUGA---------UCUCGGUc------AUGGcc -5'
16669 3' -51.9 NC_004156.1 + 131489 0.67 0.990441
Target:  5'- uGCUACCGGUACUGuuGCU----CCGGa -3'
miRNA:   3'- -UGAUGGUCAUGAUcuCGGucauGGCC- -5'
16669 3' -51.9 NC_004156.1 + 45232 0.67 0.990441
Target:  5'- cGCUACCuGUACcgAGAGCCucuGUcuguUCGGc -3'
miRNA:   3'- -UGAUGGuCAUGa-UCUCGGu--CAu---GGCC- -5'
16669 3' -51.9 NC_004156.1 + 80005 0.67 0.989139
Target:  5'- uGCUGCguaaAGUACauaaacAGAGUCAGUGCCa- -3'
miRNA:   3'- -UGAUGg---UCAUGa-----UCUCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 113658 0.68 0.987703
Target:  5'- --aGCCAGUAgacgAGAuaccgGCCAGUACCGu -3'
miRNA:   3'- ugaUGGUCAUga--UCU-----CGGUCAUGGCc -5'
16669 3' -51.9 NC_004156.1 + 220264 0.68 0.987703
Target:  5'- aACUGCaagAGUAC-AGAGCCAuaGCCGa -3'
miRNA:   3'- -UGAUGg--UCAUGaUCUCGGUcaUGGCc -5'
16669 3' -51.9 NC_004156.1 + 80506 0.68 0.986125
Target:  5'- cACUcaAUCGGcUACUGGuGCgAGUACUGGc -3'
miRNA:   3'- -UGA--UGGUC-AUGAUCuCGgUCAUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 40793 0.68 0.982509
Target:  5'- --gGCCAGaGCcAGAGCCAGaGCCa- -3'
miRNA:   3'- ugaUGGUCaUGaUCUCGGUCaUGGcc -5'
16669 3' -51.9 NC_004156.1 + 191326 0.68 0.982311
Target:  5'- cACUACCAGUAgUGGuGuaaucaaaauccaCCGGcACCGGu -3'
miRNA:   3'- -UGAUGGUCAUgAUCuC-------------GGUCaUGGCC- -5'
16669 3' -51.9 NC_004156.1 + 22581 0.68 0.978225
Target:  5'- --gACuCGGUGCUcGGAGCuCGGUGCuCGGu -3'
miRNA:   3'- ugaUG-GUCAUGA-UCUCG-GUCAUG-GCC- -5'
16669 3' -51.9 NC_004156.1 + 139876 0.69 0.975812
Target:  5'- uCUACCAGUGC-GGAGUCGuauuGU-CCGGu -3'
miRNA:   3'- uGAUGGUCAUGaUCUCGGU----CAuGGCC- -5'
16669 3' -51.9 NC_004156.1 + 17668 0.69 0.975812
Target:  5'- cACUACUAGUGCUAcaaCUAGUACCa- -3'
miRNA:   3'- -UGAUGGUCAUGAUcucGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 206314 0.69 0.975812
Target:  5'- aGC-ACCGGUACcAGuGCCGGUACUc- -3'
miRNA:   3'- -UGaUGGUCAUGaUCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 123061 0.69 0.973211
Target:  5'- aACcACCGGUGCaagcaccAGuGCCAGUACCa- -3'
miRNA:   3'- -UGaUGGUCAUGa------UCuCGGUCAUGGcc -5'
16669 3' -51.9 NC_004156.1 + 173570 0.69 0.970412
Target:  5'- -aUACC-GUAUUaAGAGUguGUACCGGu -3'
miRNA:   3'- ugAUGGuCAUGA-UCUCGguCAUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.