miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16684 5' -47.1 NC_004156.1 + 55408 0.66 0.999973
Target:  5'- -aUACUACUACauGUAG-GGUGGUGCa -3'
miRNA:   3'- ucGUGAUGAUGguCAUCaUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 7065 0.66 0.999973
Target:  5'- uAGUAgUAUUAUUAGUAGUGuUAGUAUu -3'
miRNA:   3'- -UCGUgAUGAUGGUCAUCAUcAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 123049 0.66 0.999963
Target:  5'- aAGCACcAgUGCCAGUAccAGUaccAGUACc -3'
miRNA:   3'- -UCGUGaUgAUGGUCAUcaUCA---UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 171342 0.66 0.999963
Target:  5'- gAGCcacuGCUACUGCCAGUGuuguaagcGUuGUAGcUACc -3'
miRNA:   3'- -UCG----UGAUGAUGGUCAU--------CAuCAUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 106259 0.66 0.999963
Target:  5'- uGCAUUcucGC-ACCGGUAG-AGUGGUAa -3'
miRNA:   3'- uCGUGA---UGaUGGUCAUCaUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 114971 0.66 0.999963
Target:  5'- cGCAaccACUGCCAGUAGaauGUauuucaGGUACg -3'
miRNA:   3'- uCGUga-UGAUGGUCAUCau-CA------UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 145438 0.66 0.999963
Target:  5'- aGGUugUugUugU--UGGUGGUGGUGCu -3'
miRNA:   3'- -UCGugAugAugGucAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 46116 0.66 0.999963
Target:  5'- uGGCcUUACUGCCcuuUGGU-GUAGUGCa -3'
miRNA:   3'- -UCGuGAUGAUGGuc-AUCAuCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 55601 0.66 0.999963
Target:  5'- uGGCuaGCUGCUGCCGGcauGUAG-AGcUACu -3'
miRNA:   3'- -UCG--UGAUGAUGGUCau-CAUCaUC-AUG- -5'
16684 5' -47.1 NC_004156.1 + 81791 0.66 0.999951
Target:  5'- cGCGCcuCUucAUCGGUGGcGGUGGUGCg -3'
miRNA:   3'- uCGUGauGA--UGGUCAUCaUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 29223 0.66 0.999945
Target:  5'- uGCGCUGUUGCCAuGgaaauugaugcuGUGGUGGUGCu -3'
miRNA:   3'- uCGUGAUGAUGGU-Cau----------CAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 49263 0.67 0.999935
Target:  5'- gAGgAUUACcgugaUGCUgAGUAGUAGUAGUAUn -3'
miRNA:   3'- -UCgUGAUG-----AUGG-UCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 114848 0.67 0.999935
Target:  5'- aGGUAgUGCUAgUGGUguuGGUAGUGGUGa -3'
miRNA:   3'- -UCGUgAUGAUgGUCA---UCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 131018 0.67 0.999914
Target:  5'- uAGCAgUGgUAgCAGUAGcaaUAGUGGUAg -3'
miRNA:   3'- -UCGUgAUgAUgGUCAUC---AUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 224912 0.67 0.999914
Target:  5'- uGUAgUGUUAgUAGUGGUAGUAGUAUu -3'
miRNA:   3'- uCGUgAUGAUgGUCAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 199289 0.67 0.999914
Target:  5'- cAGCAaacggACgcAUCGGUGGUGGUGGUGu -3'
miRNA:   3'- -UCGUga---UGa-UGGUCAUCAUCAUCAUg -5'
16684 5' -47.1 NC_004156.1 + 24978 0.67 0.999887
Target:  5'- cAGCACcucUACUAaacgcuauCCucUAGUAGUAGUACu -3'
miRNA:   3'- -UCGUG---AUGAU--------GGucAUCAUCAUCAUG- -5'
16684 5' -47.1 NC_004156.1 + 173765 0.67 0.999868
Target:  5'- aGGCACUugUcaucggaacucgaguACCAuuugcuGUGGUAGUagAGUACc -3'
miRNA:   3'- -UCGUGAugA---------------UGGU------CAUCAUCA--UCAUG- -5'
16684 5' -47.1 NC_004156.1 + 206011 0.67 0.999853
Target:  5'- uGGCACUGCUcgauGCCGGUA-UAGauuuUAGUAa -3'
miRNA:   3'- -UCGUGAUGA----UGGUCAUcAUC----AUCAUg -5'
16684 5' -47.1 NC_004156.1 + 158091 0.67 0.999811
Target:  5'- cAGCACUAUgACCGGUacauuAGUaacGGUccGGUACu -3'
miRNA:   3'- -UCGUGAUGaUGGUCA-----UCA---UCA--UCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.