Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 138124 | 0.67 | 0.981441 |
|
Target: 5'- -uGUGCACGCCGCguuugaUGCAaauCUUUACCGa -3' miRNA: 3'- agUACGUGUGGUG------AUGU---GGAGUGGCa -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 60011 | 0.66 | 0.983413 |
|
Target: 5'- ---cGCAUGCCuCUAUACCUaCACCa- -3' miRNA: 3'- aguaCGUGUGGuGAUGUGGA-GUGGca -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 143314 | 0.66 | 0.985221 |
|
Target: 5'- -gGUGCACACCAguUUACACUUgaaGCCa- -3' miRNA: 3'- agUACGUGUGGU--GAUGUGGAg--UGGca -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 213872 | 0.66 | 0.985221 |
|
Target: 5'- -uGUGCACaAUgACUGCACCguauCCGUa -3' miRNA: 3'- agUACGUG-UGgUGAUGUGGagu-GGCA- -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 218335 | 0.66 | 0.988383 |
|
Target: 5'- aCAUGCACucGCCGCUACggaucgaaGCCagGCCc- -3' miRNA: 3'- aGUACGUG--UGGUGAUG--------UGGagUGGca -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 183874 | 0.66 | 0.988383 |
|
Target: 5'- aCA-GCACACUACcgauCGCCaCACCGg -3' miRNA: 3'- aGUaCGUGUGGUGau--GUGGaGUGGCa -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 208201 | 0.66 | 0.989753 |
|
Target: 5'- -aAUGCACACCGCUAgagGCCUacauuaUAUCGUc -3' miRNA: 3'- agUACGUGUGGUGAUg--UGGA------GUGGCA- -5' |
|||||||
| 16687 | 5' | -53.2 | NC_004156.1 | + | 86492 | 0.66 | 0.989753 |
|
Target: 5'- uUCAgGCGuCACCACUGgaaACgUUACCGUc -3' miRNA: 3'- -AGUaCGU-GUGGUGAUg--UGgAGUGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home