miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16692 5' -49 NC_004156.1 + 137097 0.66 0.999805
Target:  5'- --cCGAGCGCGGuccucauguacauGUGC-UGUACUCGu -3'
miRNA:   3'- auaGUUUGUGCC-------------UACGuACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 95828 0.66 0.999757
Target:  5'- cGUCAaccuGACugGGGUGCcuAUGCAagUGGa -3'
miRNA:   3'- aUAGU----UUGugCCUACG--UACGUgaGCC- -5'
16692 5' -49 NC_004156.1 + 212104 0.66 0.999693
Target:  5'- --cCGGAUACGGucUGCAcuUGCACaCGGu -3'
miRNA:   3'- auaGUUUGUGCCu-ACGU--ACGUGaGCC- -5'
16692 5' -49 NC_004156.1 + 87115 0.66 0.999686
Target:  5'- cUAUCAAcgccuACugGuauguuuGAUGCAacGCACUCGGu -3'
miRNA:   3'- -AUAGUU-----UGugC-------CUACGUa-CGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 130916 0.66 0.999614
Target:  5'- aAUCAAACugGGccaUGUGCACUUGa -3'
miRNA:   3'- aUAGUUUGugCCuacGUACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 32060 0.66 0.999614
Target:  5'- gAUCAAAgGcCGGG-GCuagGUACUCGGu -3'
miRNA:   3'- aUAGUUUgU-GCCUaCGua-CGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 71021 0.66 0.999519
Target:  5'- -uUCAAcUugGGcgaAUGCAUGCACaUUGGc -3'
miRNA:   3'- auAGUUuGugCC---UACGUACGUG-AGCC- -5'
16692 5' -49 NC_004156.1 + 193912 0.67 0.999403
Target:  5'- cAUC-GugAUGGuUGCGUGCACUCc- -3'
miRNA:   3'- aUAGuUugUGCCuACGUACGUGAGcc -5'
16692 5' -49 NC_004156.1 + 183996 0.67 0.999217
Target:  5'- --gCGAAUAUGGccaaaucggcuccgGUGaGUGCACUCGGa -3'
miRNA:   3'- auaGUUUGUGCC--------------UACgUACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 83011 0.67 0.999098
Target:  5'- aGUCAAACAUGc-UGCAauccaccuuuUGCACUCGu -3'
miRNA:   3'- aUAGUUUGUGCcuACGU----------ACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 205613 0.67 0.9989
Target:  5'- gAUCGGuACACGGGUGCAcagauggagGCACgaagCGa -3'
miRNA:   3'- aUAGUU-UGUGCCUACGUa--------CGUGa---GCc -5'
16692 5' -49 NC_004156.1 + 218488 0.67 0.998668
Target:  5'- cAUCAA--GCGGAuuaaagUGCAU-CACUCGGu -3'
miRNA:   3'- aUAGUUugUGCCU------ACGUAcGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 187983 0.68 0.998075
Target:  5'- gGUCGAgcuGCAC-GAUGCuUGCACUCu- -3'
miRNA:   3'- aUAGUU---UGUGcCUACGuACGUGAGcc -5'
16692 5' -49 NC_004156.1 + 169850 0.68 0.997703
Target:  5'- --aCGAGCugGGAUGCGaguUGCGCg--- -3'
miRNA:   3'- auaGUUUGugCCUACGU---ACGUGagcc -5'
16692 5' -49 NC_004156.1 + 19736 0.68 0.99678
Target:  5'- aAUCGGuACACGG--GCAUcGCugUCGGu -3'
miRNA:   3'- aUAGUU-UGUGCCuaCGUA-CGugAGCC- -5'
16692 5' -49 NC_004156.1 + 226223 0.69 0.994012
Target:  5'- ---uGAACaaACGGAUGCAaaaUGgACUCGGc -3'
miRNA:   3'- auagUUUG--UGCCUACGU---ACgUGAGCC- -5'
16692 5' -49 NC_004156.1 + 151312 0.7 0.989586
Target:  5'- gUGUCcAGC-CGGAggGCAUcguugcGCACUCGGa -3'
miRNA:   3'- -AUAGuUUGuGCCUa-CGUA------CGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 22679 0.71 0.982942
Target:  5'- --gCAGACACGGAgcGCAggGUaACUCGGa -3'
miRNA:   3'- auaGUUUGUGCCUa-CGUa-CG-UGAGCC- -5'
16692 5' -49 NC_004156.1 + 96434 0.72 0.967582
Target:  5'- gAUUGGACACacuGGGUGCAcugggUGCACUgGGg -3'
miRNA:   3'- aUAGUUUGUG---CCUACGU-----ACGUGAgCC- -5'
16692 5' -49 NC_004156.1 + 2223 0.72 0.967582
Target:  5'- cAUUGGACAUGGAUGUauuagaugAUGCAUUCGa -3'
miRNA:   3'- aUAGUUUGUGCCUACG--------UACGUGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.