miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16692 5' -49 NC_004156.1 + 180399 0.72 0.964291
Target:  5'- aAUCGGuuuGCG-GGAUGCGgcaGCACUCGGu -3'
miRNA:   3'- aUAGUU---UGUgCCUACGUa--CGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 203365 0.73 0.953033
Target:  5'- aAUCuugcAGCACGGAUGCcgaaccUGUACUUGGu -3'
miRNA:   3'- aUAGu---UUGUGCCUACGu-----ACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 166086 0.73 0.952621
Target:  5'- gAUCGA-CACGGAcaacgGCguccgucugaguuGUGCACUCGGa -3'
miRNA:   3'- aUAGUUuGUGCCUa----CG-------------UACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 52601 0.75 0.90597
Target:  5'- gUAUCGAGCACGGua--AUGUACUUGGu -3'
miRNA:   3'- -AUAGUUUGUGCCuacgUACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 85318 0.77 0.829823
Target:  5'- cGUCuuuGACugGGGUGCGuuaaagaUGCACUUGGc -3'
miRNA:   3'- aUAGu--UUGugCCUACGU-------ACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 138370 0.81 0.622425
Target:  5'- cAUCAAACGCGGcGUGCAcaUGCuCUCGGu -3'
miRNA:   3'- aUAGUUUGUGCC-UACGU--ACGuGAGCC- -5'
16692 5' -49 NC_004156.1 + 172650 1 0.067684
Target:  5'- uUAUC-AACACGGAUGCAUGCACUCGGu -3'
miRNA:   3'- -AUAGuUUGUGCCUACGUACGUGAGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.