miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 38369 1.14 0.004507
Target:  5'- aGUUGCAACGACACAAGCGCGACAUGCg -3'
miRNA:   3'- -CAACGUUGCUGUGUUCGCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 124731 0.81 0.441626
Target:  5'- aGUUGCAACuuGACACuGGCGCGACAa-- -3'
miRNA:   3'- -CAACGUUG--CUGUGuUCGCGCUGUacg -5'
16981 3' -49.9 NC_004323.1 + 130144 0.76 0.703854
Target:  5'- --gGCAGCGAUcugcgcuccaGCAAuaGCGACGUGCg -3'
miRNA:   3'- caaCGUUGCUG----------UGUUcgCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 120517 0.75 0.755853
Target:  5'- -aUGCGACG-CGCAAGCGa-GCGUGUg -3'
miRNA:   3'- caACGUUGCuGUGUUCGCgcUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 53847 0.74 0.765929
Target:  5'- gGUUGCAucGCgGGCACGGGCGcCGGCG-GCu -3'
miRNA:   3'- -CAACGU--UG-CUGUGUUCGC-GCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 30977 0.74 0.775872
Target:  5'- --cGCAcCGACACGGGCGCuGuCGUGUc -3'
miRNA:   3'- caaCGUuGCUGUGUUCGCG-CuGUACG- -5'
16981 3' -49.9 NC_004323.1 + 64093 0.74 0.804795
Target:  5'- --aGCuGGCGACGCGAGC-CGGCAaGCa -3'
miRNA:   3'- caaCG-UUGCUGUGUUCGcGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 120028 0.73 0.814098
Target:  5'- --gGCGACGGCgGCGAGUugGCGGCAgGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUCG--CGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 1124 0.73 0.823217
Target:  5'- -gUGCAGCGcaucaACGCGGGCGgCGACuUGUa -3'
miRNA:   3'- caACGUUGC-----UGUGUUCGC-GCUGuACG- -5'
16981 3' -49.9 NC_004323.1 + 118024 0.73 0.832141
Target:  5'- --cGCAAUGGCGCAGcguGCGCGAUAccGCc -3'
miRNA:   3'- caaCGUUGCUGUGUU---CGCGCUGUa-CG- -5'
16981 3' -49.9 NC_004323.1 + 1625 0.72 0.864917
Target:  5'- uGUUGagauGCGACaACGGGCGCauuguuaauucuuGACGUGCg -3'
miRNA:   3'- -CAACgu--UGCUG-UGUUCGCG-------------CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 4736 0.7 0.937714
Target:  5'- -gUGCAgGCGGgGCAGGCGgGGCuggcgGCg -3'
miRNA:   3'- caACGU-UGCUgUGUUCGCgCUGua---CG- -5'
16981 3' -49.9 NC_004323.1 + 119353 0.7 0.941214
Target:  5'- uGUUGCAACGcuaccgaagcauguGCACGAGaCcCGACGUGg -3'
miRNA:   3'- -CAACGUUGC--------------UGUGUUC-GcGCUGUACg -5'
16981 3' -49.9 NC_004323.1 + 42553 0.7 0.942674
Target:  5'- --aGCGugGGa--GAGCGCGgACGUGCc -3'
miRNA:   3'- caaCGUugCUgugUUCGCGC-UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 20204 0.7 0.946912
Target:  5'- uUUGCcg-GAUaagaacaaaacuaGCGAGCGCGACAUGUu -3'
miRNA:   3'- cAACGuugCUG-------------UGUUCGCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 117646 0.69 0.951804
Target:  5'- uGUUGCuuagcACGACuCGGcGCGUGACcGUGCg -3'
miRNA:   3'- -CAACGu----UGCUGuGUU-CGCGCUG-UACG- -5'
16981 3' -49.9 NC_004323.1 + 22044 0.69 0.951804
Target:  5'- -aUGCcgacACGGCAUAAGCaCGGCGUcGCg -3'
miRNA:   3'- caACGu---UGCUGUGUUCGcGCUGUA-CG- -5'
16981 3' -49.9 NC_004323.1 + 62256 0.69 0.95598
Target:  5'- --aGCAACcuAUACAAuaGCGGCGUGCc -3'
miRNA:   3'- caaCGUUGc-UGUGUUcgCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 63826 0.69 0.95598
Target:  5'- --gGCGACGACucuguacaccaACAAG-GUGugGUGCg -3'
miRNA:   3'- caaCGUUGCUG-----------UGUUCgCGCugUACG- -5'
16981 3' -49.9 NC_004323.1 + 99776 0.69 0.96358
Target:  5'- -cUGCAucagGCGACACGcuGGCGCuAgGUGUg -3'
miRNA:   3'- caACGU----UGCUGUGU--UCGCGcUgUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.