miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 38369 1.14 0.004507
Target:  5'- aGUUGCAACGACACAAGCGCGACAUGCg -3'
miRNA:   3'- -CAACGUUGCUGUGUUCGCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 14729 0.67 0.986675
Target:  5'- cUUGCGAaacaguacgGGCGaAAGCGuCGGCGUGCg -3'
miRNA:   3'- cAACGUUg--------CUGUgUUCGC-GCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 96503 0.67 0.988289
Target:  5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3'
miRNA:   3'- caACGUUGcugUGUUCGCGC------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 75366 0.67 0.989747
Target:  5'- --gGCGACGACGCGuuCGaCGACGcgucUGUa -3'
miRNA:   3'- caaCGUUGCUGUGUucGC-GCUGU----ACG- -5'
16981 3' -49.9 NC_004323.1 + 74543 0.67 0.989747
Target:  5'- -aUGCAcgcgucgaACGACACGauGGaCGCGAaaAUGCa -3'
miRNA:   3'- caACGU--------UGCUGUGU--UC-GCGCUg-UACG- -5'
16981 3' -49.9 NC_004323.1 + 72072 0.66 0.992235
Target:  5'- -----cGCGACACAacGGCGU-ACGUGCg -3'
miRNA:   3'- caacguUGCUGUGU--UCGCGcUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 16507 0.66 0.994217
Target:  5'- aGUUGUuggagGACGGCACuAGGCGguuCGAaAUGCg -3'
miRNA:   3'- -CAACG-----UUGCUGUG-UUCGC---GCUgUACG- -5'
16981 3' -49.9 NC_004323.1 + 109650 0.66 0.994217
Target:  5'- -aUGCcAUGACGuugcgaGAGCGCGGCGUa- -3'
miRNA:   3'- caACGuUGCUGUg-----UUCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 18322 0.66 0.994965
Target:  5'- --aGCGACGAUguggacaACAuGUGCGACAUu- -3'
miRNA:   3'- caaCGUUGCUG-------UGUuCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 85732 0.67 0.986675
Target:  5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3'
miRNA:   3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 124433 0.68 0.978468
Target:  5'- -aUGCAAacaaaucuCGAUAaAGGCGCGGCGcGCg -3'
miRNA:   3'- caACGUU--------GCUGUgUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 954 0.68 0.978468
Target:  5'- --aGCGACGGCuACAAGuCGCcGCccGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUC-GCGcUGuaCG- -5'
16981 3' -49.9 NC_004323.1 + 124731 0.81 0.441626
Target:  5'- aGUUGCAACuuGACACuGGCGCGACAa-- -3'
miRNA:   3'- -CAACGUUG--CUGUGuUCGCGCUGUacg -5'
16981 3' -49.9 NC_004323.1 + 130144 0.76 0.703854
Target:  5'- --gGCAGCGAUcugcgcuccaGCAAuaGCGACGUGCg -3'
miRNA:   3'- caaCGUUGCUG----------UGUUcgCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 30977 0.74 0.775872
Target:  5'- --cGCAcCGACACGGGCGCuGuCGUGUc -3'
miRNA:   3'- caaCGUuGCUGUGUUCGCG-CuGUACG- -5'
16981 3' -49.9 NC_004323.1 + 120028 0.73 0.814098
Target:  5'- --gGCGACGGCgGCGAGUugGCGGCAgGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUCG--CGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 4736 0.7 0.937714
Target:  5'- -gUGCAgGCGGgGCAGGCGgGGCuggcgGCg -3'
miRNA:   3'- caACGU-UGCUgUGUUCGCgCUGua---CG- -5'
16981 3' -49.9 NC_004323.1 + 99776 0.69 0.96358
Target:  5'- -cUGCAucagGCGACACGcuGGCGCuAgGUGUg -3'
miRNA:   3'- caACGU----UGCUGUGU--UCGCGcUgUACG- -5'
16981 3' -49.9 NC_004323.1 + 129007 0.68 0.970211
Target:  5'- aUUGCGGCGAUgcaaACAAGUcugGCGAU-UGCg -3'
miRNA:   3'- cAACGUUGCUG----UGUUCG---CGCUGuACG- -5'
16981 3' -49.9 NC_004323.1 + 21574 0.68 0.975931
Target:  5'- --gGCc-CGGCGCAuuGCGUGACAUGa -3'
miRNA:   3'- caaCGuuGCUGUGUu-CGCGCUGUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.