Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 63826 | 0.69 | 0.95598 |
Target: 5'- --gGCGACGACucuguacaccaACAAG-GUGugGUGCg -3' miRNA: 3'- caaCGUUGCUG-----------UGUUCgCGCugUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 38163 | 0.69 | 0.966008 |
Target: 5'- uUUGCAguuuagagccaaugGCGACAUuggcucGGCG-GACGUGCa -3' miRNA: 3'- cAACGU--------------UGCUGUGu-----UCGCgCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 59919 | 0.68 | 0.973181 |
Target: 5'- -gUGCAcACGGC-CAGGUGaCGGCAcgGCa -3' miRNA: 3'- caACGU-UGCUGuGUUCGC-GCUGUa-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 86091 | 0.68 | 0.978224 |
Target: 5'- uUUGCGACGaACAUcaAAGCGUgcaguugaacaccGACGUGUu -3' miRNA: 3'- cAACGUUGC-UGUG--UUCGCG-------------CUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 75439 | 0.67 | 0.984896 |
Target: 5'- --gGuCAGCGGCACGAaCGgCGAUAUGUu -3' miRNA: 3'- caaC-GUUGCUGUGUUcGC-GCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 26791 | 0.67 | 0.984896 |
Target: 5'- --cGCGuaucGCGGCACA--CGCGACAuaacaUGCa -3' miRNA: 3'- caaCGU----UGCUGUGUucGCGCUGU-----ACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 83946 | 0.67 | 0.988289 |
Target: 5'- --cGcCGACGACAU--GCGCGAUAUcagGCa -3' miRNA: 3'- caaC-GUUGCUGUGuuCGCGCUGUA---CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 14000 | 0.67 | 0.988289 |
Target: 5'- --cGaCGACGACAgAAGCGCauuaaaAUGCa -3' miRNA: 3'- caaC-GUUGCUGUgUUCGCGcug---UACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 107564 | 0.66 | 0.991059 |
Target: 5'- uUUGaCGGCGACGCAuucgGGCuuuGCGGCGgagcacUGCa -3' miRNA: 3'- cAAC-GUUGCUGUGU----UCG---CGCUGU------ACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 62256 | 0.69 | 0.95598 |
Target: 5'- --aGCAACcuAUACAAuaGCGGCGUGCc -3' miRNA: 3'- caaCGUUGc-UGUGUUcgCGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 22044 | 0.69 | 0.951804 |
Target: 5'- -aUGCcgacACGGCAUAAGCaCGGCGUcGCg -3' miRNA: 3'- caACGu---UGCUGUGUUCGcGCUGUA-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 117646 | 0.69 | 0.951804 |
Target: 5'- uGUUGCuuagcACGACuCGGcGCGUGACcGUGCg -3' miRNA: 3'- -CAACGu----UGCUGuGUU-CGCGCUG-UACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 53847 | 0.74 | 0.765929 |
Target: 5'- gGUUGCAucGCgGGCACGGGCGcCGGCG-GCu -3' miRNA: 3'- -CAACGU--UG-CUGUGUUCGC-GCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 64093 | 0.74 | 0.804795 |
Target: 5'- --aGCuGGCGACGCGAGC-CGGCAaGCa -3' miRNA: 3'- caaCG-UUGCUGUGUUCGcGCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 1124 | 0.73 | 0.823217 |
Target: 5'- -gUGCAGCGcaucaACGCGGGCGgCGACuUGUa -3' miRNA: 3'- caACGUUGC-----UGUGUUCGC-GCUGuACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 118024 | 0.73 | 0.832141 |
Target: 5'- --cGCAAUGGCGCAGcguGCGCGAUAccGCc -3' miRNA: 3'- caaCGUUGCUGUGUU---CGCGCUGUa-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 1625 | 0.72 | 0.864917 |
Target: 5'- uGUUGagauGCGACaACGGGCGCauuguuaauucuuGACGUGCg -3' miRNA: 3'- -CAACgu--UGCUG-UGUUCGCG-------------CUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 119353 | 0.7 | 0.941214 |
Target: 5'- uGUUGCAACGcuaccgaagcauguGCACGAGaCcCGACGUGg -3' miRNA: 3'- -CAACGUUGC--------------UGUGUUC-GcGCUGUACg -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 42553 | 0.7 | 0.942674 |
Target: 5'- --aGCGugGGa--GAGCGCGgACGUGCc -3' miRNA: 3'- caaCGUugCUgugUUCGCGC-UGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 20204 | 0.7 | 0.946912 |
Target: 5'- uUUGCcg-GAUaagaacaaaacuaGCGAGCGCGACAUGUu -3' miRNA: 3'- cAACGuugCUG-------------UGUUCGCGCUGUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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