Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 53847 | 0.74 | 0.765929 |
Target: 5'- gGUUGCAucGCgGGCACGGGCGcCGGCG-GCu -3' miRNA: 3'- -CAACGU--UG-CUGUGUUCGC-GCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 59919 | 0.68 | 0.973181 |
Target: 5'- -gUGCAcACGGC-CAGGUGaCGGCAcgGCa -3' miRNA: 3'- caACGU-UGCUGuGUUCGC-GCUGUa-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 62256 | 0.69 | 0.95598 |
Target: 5'- --aGCAACcuAUACAAuaGCGGCGUGCc -3' miRNA: 3'- caaCGUUGc-UGUGUUcgCGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 63826 | 0.69 | 0.95598 |
Target: 5'- --gGCGACGACucuguacaccaACAAG-GUGugGUGCg -3' miRNA: 3'- caaCGUUGCUG-----------UGUUCgCGCugUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 64093 | 0.74 | 0.804795 |
Target: 5'- --aGCuGGCGACGCGAGC-CGGCAaGCa -3' miRNA: 3'- caaCG-UUGCUGUGUUCGcGCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 64418 | 0.66 | 0.994217 |
Target: 5'- ---aUggUGGCGgAAGCgGUGACGUGCa -3' miRNA: 3'- caacGuuGCUGUgUUCG-CGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 72072 | 0.66 | 0.992235 |
Target: 5'- -----cGCGACACAacGGCGU-ACGUGCg -3' miRNA: 3'- caacguUGCUGUGU--UCGCGcUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 74220 | 0.66 | 0.995043 |
Target: 5'- cGUgacCAACGcC-CGAGCGCGGCGagGCg -3' miRNA: 3'- -CAac-GUUGCuGuGUUCGCGCUGUa-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 74543 | 0.67 | 0.989747 |
Target: 5'- -aUGCAcgcgucgaACGACACGauGGaCGCGAaaAUGCa -3' miRNA: 3'- caACGU--------UGCUGUGU--UC-GCGCUg-UACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 75366 | 0.67 | 0.989747 |
Target: 5'- --gGCGACGACGCGuuCGaCGACGcgucUGUa -3' miRNA: 3'- caaCGUUGCUGUGUucGC-GCUGU----ACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 75439 | 0.67 | 0.984896 |
Target: 5'- --gGuCAGCGGCACGAaCGgCGAUAUGUu -3' miRNA: 3'- caaC-GUUGCUGUGUUcGC-GCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 80680 | 0.66 | 0.991059 |
Target: 5'- aUUGCAAU-ACAugcCAAGC-CGAUAUGCg -3' miRNA: 3'- cAACGUUGcUGU---GUUCGcGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 83946 | 0.67 | 0.988289 |
Target: 5'- --cGcCGACGACAU--GCGCGAUAUcagGCa -3' miRNA: 3'- caaC-GUUGCUGUGuuCGCGCUGUA---CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 85732 | 0.67 | 0.986675 |
Target: 5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3' miRNA: 3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 86091 | 0.68 | 0.978224 |
Target: 5'- uUUGCGACGaACAUcaAAGCGUgcaguugaacaccGACGUGUu -3' miRNA: 3'- cAACGUUGC-UGUG--UUCGCG-------------CUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 87093 | 0.66 | 0.994806 |
Target: 5'- uUUGCGACaaagcguauucuuuGuACACAAaaCGCGACAUGUg -3' miRNA: 3'- cAACGUUG--------------C-UGUGUUc-GCGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 96503 | 0.67 | 0.988289 |
Target: 5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3' miRNA: 3'- caACGUUGcugUGUUCGCGC------UGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 99776 | 0.69 | 0.96358 |
Target: 5'- -cUGCAucagGCGACACGcuGGCGCuAgGUGUg -3' miRNA: 3'- caACGU----UGCUGUGU--UCGCGcUgUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 107564 | 0.66 | 0.991059 |
Target: 5'- uUUGaCGGCGACGCAuucgGGCuuuGCGGCGgagcacUGCa -3' miRNA: 3'- cAAC-GUUGCUGUGU----UCG---CGCUGU------ACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 109650 | 0.66 | 0.994217 |
Target: 5'- -aUGCcAUGACGuugcgaGAGCGCGGCGUa- -3' miRNA: 3'- caACGuUGCUGUg-----UUCGCGCUGUAcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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