miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 38163 0.69 0.966008
Target:  5'- uUUGCAguuuagagccaaugGCGACAUuggcucGGCG-GACGUGCa -3'
miRNA:   3'- cAACGU--------------UGCUGUGu-----UCGCgCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 129007 0.68 0.970211
Target:  5'- aUUGCGGCGAUgcaaACAAGUcugGCGAU-UGCg -3'
miRNA:   3'- cAACGUUGCUG----UGUUCG---CGCUGuACG- -5'
16981 3' -49.9 NC_004323.1 + 59919 0.68 0.973181
Target:  5'- -gUGCAcACGGC-CAGGUGaCGGCAcgGCa -3'
miRNA:   3'- caACGU-UGCUGuGUUCGC-GCUGUa-CG- -5'
16981 3' -49.9 NC_004323.1 + 21574 0.68 0.975931
Target:  5'- --gGCc-CGGCGCAuuGCGUGACAUGa -3'
miRNA:   3'- caaCGuuGCUGUGUu-CGCGCUGUACg -5'
16981 3' -49.9 NC_004323.1 + 86091 0.68 0.978224
Target:  5'- uUUGCGACGaACAUcaAAGCGUgcaguugaacaccGACGUGUu -3'
miRNA:   3'- cAACGUUGC-UGUG--UUCGCG-------------CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 954 0.68 0.978468
Target:  5'- --aGCGACGGCuACAAGuCGCcGCccGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUC-GCGcUGuaCG- -5'
16981 3' -49.9 NC_004323.1 + 124433 0.68 0.978468
Target:  5'- -aUGCAAacaaaucuCGAUAaAGGCGCGGCGcGCg -3'
miRNA:   3'- caACGUU--------GCUGUgUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 75439 0.67 0.984896
Target:  5'- --gGuCAGCGGCACGAaCGgCGAUAUGUu -3'
miRNA:   3'- caaC-GUUGCUGUGUUcGC-GCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 26791 0.67 0.984896
Target:  5'- --cGCGuaucGCGGCACA--CGCGACAuaacaUGCa -3'
miRNA:   3'- caaCGU----UGCUGUGUucGCGCUGU-----ACG- -5'
16981 3' -49.9 NC_004323.1 + 14729 0.67 0.986675
Target:  5'- cUUGCGAaacaguacgGGCGaAAGCGuCGGCGUGCg -3'
miRNA:   3'- cAACGUUg--------CUGUgUUCGC-GCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 85732 0.67 0.986675
Target:  5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3'
miRNA:   3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 14000 0.67 0.988289
Target:  5'- --cGaCGACGACAgAAGCGCauuaaaAUGCa -3'
miRNA:   3'- caaC-GUUGCUGUgUUCGCGcug---UACG- -5'
16981 3' -49.9 NC_004323.1 + 83946 0.67 0.988289
Target:  5'- --cGcCGACGACAU--GCGCGAUAUcagGCa -3'
miRNA:   3'- caaC-GUUGCUGUGuuCGCGCUGUA---CG- -5'
16981 3' -49.9 NC_004323.1 + 96503 0.67 0.988289
Target:  5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3'
miRNA:   3'- caACGUUGcugUGUUCGCGC------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 75366 0.67 0.989747
Target:  5'- --gGCGACGACGCGuuCGaCGACGcgucUGUa -3'
miRNA:   3'- caaCGUUGCUGUGUucGC-GCUGU----ACG- -5'
16981 3' -49.9 NC_004323.1 + 74543 0.67 0.989747
Target:  5'- -aUGCAcgcgucgaACGACACGauGGaCGCGAaaAUGCa -3'
miRNA:   3'- caACGU--------UGCUGUGU--UC-GCGCUg-UACG- -5'
16981 3' -49.9 NC_004323.1 + 80680 0.66 0.991059
Target:  5'- aUUGCAAU-ACAugcCAAGC-CGAUAUGCg -3'
miRNA:   3'- cAACGUUGcUGU---GUUCGcGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 107564 0.66 0.991059
Target:  5'- uUUGaCGGCGACGCAuucgGGCuuuGCGGCGgagcacUGCa -3'
miRNA:   3'- cAAC-GUUGCUGUGU----UCG---CGCUGU------ACG- -5'
16981 3' -49.9 NC_004323.1 + 40420 0.66 0.991895
Target:  5'- --gGCAACGA-GguGGCGCGaaucaccaacgacaGCAUGCg -3'
miRNA:   3'- caaCGUUGCUgUguUCGCGC--------------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 72072 0.66 0.992235
Target:  5'- -----cGCGACACAacGGCGU-ACGUGCg -3'
miRNA:   3'- caacguUGCUGUGU--UCGCGcUGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.