Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16981 | 3' | -49.9 | NC_004323.1 | + | 80680 | 0.66 | 0.991059 |
Target: 5'- aUUGCAAU-ACAugcCAAGC-CGAUAUGCg -3' miRNA: 3'- cAACGUUGcUGU---GUUCGcGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 118470 | 0.66 | 0.994217 |
Target: 5'- --gGCGGCGGC-CAuGCGUGAag-GCg -3' miRNA: 3'- caaCGUUGCUGuGUuCGCGCUguaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 86091 | 0.68 | 0.978224 |
Target: 5'- uUUGCGACGaACAUcaAAGCGUgcaguugaacaccGACGUGUu -3' miRNA: 3'- cAACGUUGC-UGUG--UUCGCG-------------CUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 74220 | 0.66 | 0.995043 |
Target: 5'- cGUgacCAACGcC-CGAGCGCGGCGagGCg -3' miRNA: 3'- -CAac-GUUGCuGuGUUCGCGCUGUa-CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 121696 | 0.66 | 0.993185 |
Target: 5'- uUUGUGGCauACACGGGCGUGccggguuuuauguACAUGCg -3' miRNA: 3'- cAACGUUGc-UGUGUUCGCGC-------------UGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 37960 | 0.66 | 0.993284 |
Target: 5'- aUUGCAuuaaaGACGUggGCGUguuGGCGUGCu -3' miRNA: 3'- cAACGUug---CUGUGuuCGCG---CUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 40420 | 0.66 | 0.991895 |
Target: 5'- --gGCAACGA-GguGGCGCGaaucaccaacgacaGCAUGCg -3' miRNA: 3'- caaCGUUGCUgUguUCGCGC--------------UGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 33878 | 0.66 | 0.993284 |
Target: 5'- --cGCAGCGGC-CGAaaGgGACAUGUu -3' miRNA: 3'- caaCGUUGCUGuGUUcgCgCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 9175 | 0.66 | 0.993284 |
Target: 5'- -gUGCAcaGCGACACGAaCGCaaaAUGCu -3' miRNA: 3'- caACGU--UGCUGUGUUcGCGcugUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 64418 | 0.66 | 0.994217 |
Target: 5'- ---aUggUGGCGgAAGCgGUGACGUGCa -3' miRNA: 3'- caacGuuGCUGUgUUCG-CGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 87093 | 0.66 | 0.994806 |
Target: 5'- uUUGCGACaaagcguauucuuuGuACACAAaaCGCGACAUGUg -3' miRNA: 3'- cAACGUUG--------------C-UGUGUUc-GCGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 4736 | 0.7 | 0.937714 |
Target: 5'- -gUGCAgGCGGgGCAGGCGgGGCuggcgGCg -3' miRNA: 3'- caACGU-UGCUgUGUUCGCgCUGua---CG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 130144 | 0.76 | 0.703854 |
Target: 5'- --gGCAGCGAUcugcgcuccaGCAAuaGCGACGUGCg -3' miRNA: 3'- caaCGUUGCUG----------UGUUcgCGCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 99776 | 0.69 | 0.96358 |
Target: 5'- -cUGCAucagGCGACACGcuGGCGCuAgGUGUg -3' miRNA: 3'- caACGU----UGCUGUGU--UCGCGcUgUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 954 | 0.68 | 0.978468 |
Target: 5'- --aGCGACGGCuACAAGuCGCcGCccGCg -3' miRNA: 3'- caaCGUUGCUG-UGUUC-GCGcUGuaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 124433 | 0.68 | 0.978468 |
Target: 5'- -aUGCAAacaaaucuCGAUAaAGGCGCGGCGcGCg -3' miRNA: 3'- caACGUU--------GCUGUgUUCGCGCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 85732 | 0.67 | 0.986675 |
Target: 5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3' miRNA: 3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 14729 | 0.67 | 0.986675 |
Target: 5'- cUUGCGAaacaguacgGGCGaAAGCGuCGGCGUGCg -3' miRNA: 3'- cAACGUUg--------CUGUgUUCGC-GCUGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 96503 | 0.67 | 0.988289 |
Target: 5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3' miRNA: 3'- caACGUUGcugUGUUCGCGC------UGUACG- -5' |
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16981 | 3' | -49.9 | NC_004323.1 | + | 75366 | 0.67 | 0.989747 |
Target: 5'- --gGCGACGACGCGuuCGaCGACGcgucUGUa -3' miRNA: 3'- caaCGUUGCUGUGUucGC-GCUGU----ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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