miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16981 3' -49.9 NC_004323.1 + 130144 0.76 0.703854
Target:  5'- --gGCAGCGAUcugcgcuccaGCAAuaGCGACGUGCg -3'
miRNA:   3'- caaCGUUGCUG----------UGUUcgCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 129007 0.68 0.970211
Target:  5'- aUUGCGGCGAUgcaaACAAGUcugGCGAU-UGCg -3'
miRNA:   3'- cAACGUUGCUG----UGUUCG---CGCUGuACG- -5'
16981 3' -49.9 NC_004323.1 + 124731 0.81 0.441626
Target:  5'- aGUUGCAACuuGACACuGGCGCGACAa-- -3'
miRNA:   3'- -CAACGUUG--CUGUGuUCGCGCUGUacg -5'
16981 3' -49.9 NC_004323.1 + 124433 0.68 0.978468
Target:  5'- -aUGCAAacaaaucuCGAUAaAGGCGCGGCGcGCg -3'
miRNA:   3'- caACGUU--------GCUGUgUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 121696 0.66 0.993185
Target:  5'- uUUGUGGCauACACGGGCGUGccggguuuuauguACAUGCg -3'
miRNA:   3'- cAACGUUGc-UGUGUUCGCGC-------------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 120517 0.75 0.755853
Target:  5'- -aUGCGACG-CGCAAGCGa-GCGUGUg -3'
miRNA:   3'- caACGUUGCuGUGUUCGCgcUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 120028 0.73 0.814098
Target:  5'- --gGCGACGGCgGCGAGUugGCGGCAgGCg -3'
miRNA:   3'- caaCGUUGCUG-UGUUCG--CGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 119353 0.7 0.941214
Target:  5'- uGUUGCAACGcuaccgaagcauguGCACGAGaCcCGACGUGg -3'
miRNA:   3'- -CAACGUUGC--------------UGUGUUC-GcGCUGUACg -5'
16981 3' -49.9 NC_004323.1 + 118470 0.66 0.994217
Target:  5'- --gGCGGCGGC-CAuGCGUGAag-GCg -3'
miRNA:   3'- caaCGUUGCUGuGUuCGCGCUguaCG- -5'
16981 3' -49.9 NC_004323.1 + 118024 0.73 0.832141
Target:  5'- --cGCAAUGGCGCAGcguGCGCGAUAccGCc -3'
miRNA:   3'- caaCGUUGCUGUGUU---CGCGCUGUa-CG- -5'
16981 3' -49.9 NC_004323.1 + 117646 0.69 0.951804
Target:  5'- uGUUGCuuagcACGACuCGGcGCGUGACcGUGCg -3'
miRNA:   3'- -CAACGu----UGCUGuGUU-CGCGCUG-UACG- -5'
16981 3' -49.9 NC_004323.1 + 109650 0.66 0.994217
Target:  5'- -aUGCcAUGACGuugcgaGAGCGCGGCGUa- -3'
miRNA:   3'- caACGuUGCUGUg-----UUCGCGCUGUAcg -5'
16981 3' -49.9 NC_004323.1 + 107564 0.66 0.991059
Target:  5'- uUUGaCGGCGACGCAuucgGGCuuuGCGGCGgagcacUGCa -3'
miRNA:   3'- cAAC-GUUGCUGUGU----UCG---CGCUGU------ACG- -5'
16981 3' -49.9 NC_004323.1 + 99776 0.69 0.96358
Target:  5'- -cUGCAucagGCGACACGcuGGCGCuAgGUGUg -3'
miRNA:   3'- caACGU----UGCUGUGU--UCGCGcUgUACG- -5'
16981 3' -49.9 NC_004323.1 + 96503 0.67 0.988289
Target:  5'- -gUGUAACauaACAAGCGCGccaauuGCAUGUg -3'
miRNA:   3'- caACGUUGcugUGUUCGCGC------UGUACG- -5'
16981 3' -49.9 NC_004323.1 + 87093 0.66 0.994806
Target:  5'- uUUGCGACaaagcguauucuuuGuACACAAaaCGCGACAUGUg -3'
miRNA:   3'- cAACGUUG--------------C-UGUGUUc-GCGCUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 86091 0.68 0.978224
Target:  5'- uUUGCGACGaACAUcaAAGCGUgcaguugaacaccGACGUGUu -3'
miRNA:   3'- cAACGUUGC-UGUG--UUCGCG-------------CUGUACG- -5'
16981 3' -49.9 NC_004323.1 + 85732 0.67 0.986675
Target:  5'- ----aGGCuGCGCGGGCGCGGCG-GCg -3'
miRNA:   3'- caacgUUGcUGUGUUCGCGCUGUaCG- -5'
16981 3' -49.9 NC_004323.1 + 83946 0.67 0.988289
Target:  5'- --cGcCGACGACAU--GCGCGAUAUcagGCa -3'
miRNA:   3'- caaC-GUUGCUGUGuuCGCGCUGUA---CG- -5'
16981 3' -49.9 NC_004323.1 + 80680 0.66 0.991059
Target:  5'- aUUGCAAU-ACAugcCAAGC-CGAUAUGCg -3'
miRNA:   3'- cAACGUUGcUGU---GUUCGcGCUGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.