miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 21584 0.66 0.837677
Target:  5'- uCGUGAacgcgcCGACCACGUUcAACGaCACGa -3'
miRNA:   3'- cGCACU------GCUGGUGUAGcUUGCcGUGC- -5'
16991 5' -53.3 NC_004333.2 + 46233 0.66 0.837677
Target:  5'- ---aGGCGGcCCGCGUCGc-CGGUGCGg -3'
miRNA:   3'- cgcaCUGCU-GGUGUAGCuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 36128 0.66 0.837677
Target:  5'- ---cGACGGCCuGCG-CGAcCGGCGCa -3'
miRNA:   3'- cgcaCUGCUGG-UGUaGCUuGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 8615 0.66 0.837677
Target:  5'- cGCGaUGcACGaagccgaugcGCgACGUCGAGCucGGCGCGg -3'
miRNA:   3'- -CGC-AC-UGC----------UGgUGUAGCUUG--CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 2969 0.66 0.8323
Target:  5'- aGCGUGACG-CC-CGUCaacgGAAugccuagacgcucgcCGGCGCGu -3'
miRNA:   3'- -CGCACUGCuGGuGUAG----CUU---------------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 32274 0.66 0.828672
Target:  5'- cGUG-GGCGGUCGCAUCGucuacgauGGCGGuCACGg -3'
miRNA:   3'- -CGCaCUGCUGGUGUAGC--------UUGCC-GUGC- -5'
16991 5' -53.3 NC_004333.2 + 10147 0.66 0.828672
Target:  5'- uCGgGGCG-CCAggUAUCGAACGGguCGg -3'
miRNA:   3'- cGCaCUGCuGGU--GUAGCUUGCCguGC- -5'
16991 5' -53.3 NC_004333.2 + 9623 0.66 0.828672
Target:  5'- aGCuGUGucguugccgUGAgCGCGUCGGACGGCAaCGc -3'
miRNA:   3'- -CG-CACu--------GCUgGUGUAGCUUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 13093 0.66 0.828672
Target:  5'- gGCGUGuGCGcaGCCAguUGUCGAuguACGGCAUc -3'
miRNA:   3'- -CGCAC-UGC--UGGU--GUAGCU---UGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 32527 0.66 0.828672
Target:  5'- aGCGUuu--GCCgACGUCGcGCGGCGCGc -3'
miRNA:   3'- -CGCAcugcUGG-UGUAGCuUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 27923 0.66 0.819457
Target:  5'- aGCGUucgccuCGAUCACAagcgcaCGAACGGCAuCGa -3'
miRNA:   3'- -CGCAcu----GCUGGUGUa-----GCUUGCCGU-GC- -5'
16991 5' -53.3 NC_004333.2 + 6726 0.66 0.819457
Target:  5'- uGCGUGcaACGugCuCAauUCGAGCGcCACGg -3'
miRNA:   3'- -CGCAC--UGCugGuGU--AGCUUGCcGUGC- -5'
16991 5' -53.3 NC_004333.2 + 32359 0.66 0.819457
Target:  5'- uGCG-GaACGugCGCAggCGu-CGGCGCGa -3'
miRNA:   3'- -CGCaC-UGCugGUGUa-GCuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 43844 0.66 0.810043
Target:  5'- -aGUGAaucUGcACgACAUCGuacGCGGCGCGa -3'
miRNA:   3'- cgCACU---GC-UGgUGUAGCu--UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 21503 0.66 0.810043
Target:  5'- --cUGGCGACCugAcgcuaUCGGcagcCGGCGCGa -3'
miRNA:   3'- cgcACUGCUGGugU-----AGCUu---GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 29089 0.66 0.810043
Target:  5'- uCGUGACGGUCACA-CGGGCcGCGCc -3'
miRNA:   3'- cGCACUGCUGGUGUaGCUUGcCGUGc -5'
16991 5' -53.3 NC_004333.2 + 44104 0.66 0.810043
Target:  5'- ---cGGCGACUucGCAUCGuuucgcGGCGGCugGu -3'
miRNA:   3'- cgcaCUGCUGG--UGUAGC------UUGCCGugC- -5'
16991 5' -53.3 NC_004333.2 + 19222 0.66 0.810043
Target:  5'- cGCGUu-CGACCGCGU-GAAcaacgcgugccuCGGCGCGc -3'
miRNA:   3'- -CGCAcuGCUGGUGUAgCUU------------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 10862 0.66 0.810043
Target:  5'- cGCGcuUGACG-CCGCG-CGGGaagaacgcCGGCGCGa -3'
miRNA:   3'- -CGC--ACUGCuGGUGUaGCUU--------GCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 3141 0.66 0.807181
Target:  5'- aGCGUuuGCGcGCCGCcagcgccacgcgcgGUCGAGCGGC-CGg -3'
miRNA:   3'- -CGCAc-UGC-UGGUG--------------UAGCUUGCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.