miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 9740 0.66 0.420619
Target:  5'- gGAUCGACAAaguucgacGCGGCaaGCGucucgaUCGCCGu -3'
miRNA:   3'- -UUAGCUGUUc-------CGCCGggCGC------AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 9015 0.66 0.420619
Target:  5'- --gCGGCuugccAGGCGGCgCGC-UCGCUGc -3'
miRNA:   3'- uuaGCUGu----UCCGCCGgGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 19425 0.66 0.41143
Target:  5'- cGGUCGACGcGGC-GCUCGCGcagUUGCUGg -3'
miRNA:   3'- -UUAGCUGUuCCGcCGGGCGC---AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 42102 0.66 0.41143
Target:  5'- --gCGACGAGGCgugucgcgaGGUgCGCcaGUUGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG---------CCGgGCG--CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 2573 0.66 0.401468
Target:  5'- cGAUCGGCAaucacggccguccAGGCGGUCgUGaagGUCGCCc -3'
miRNA:   3'- -UUAGCUGU-------------UCCGCCGG-GCg--CAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 44552 0.66 0.393432
Target:  5'- aGGUCGACugcuaCGGCCCGCaggCGCCc -3'
miRNA:   3'- -UUAGCUGuucc-GCCGGGCGca-GCGGc -5'
16997 5' -60.5 NC_004333.2 + 8974 0.66 0.393432
Target:  5'- --cCGACGGGagcGCGGgCCGUGcUGCCGg -3'
miRNA:   3'- uuaGCUGUUC---CGCCgGGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 33758 0.66 0.393432
Target:  5'- uGAUCGACu-GGCGGCgCGagaaacUCGCCu -3'
miRNA:   3'- -UUAGCUGuuCCGCCGgGCgc----AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 23927 0.66 0.384627
Target:  5'- -uUCGAC-GGGCGGCacaCCGUGgaaGCCu -3'
miRNA:   3'- uuAGCUGuUCCGCCG---GGCGCag-CGGc -5'
16997 5' -60.5 NC_004333.2 + 17024 0.66 0.384627
Target:  5'- --gCGAugcCAAGGCGGgCgGCGaugcauUCGCCGg -3'
miRNA:   3'- uuaGCU---GUUCCGCCgGgCGC------AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 5187 0.66 0.384627
Target:  5'- cAUCGGuCGAGaGCGccGCCCGCucGUcCGCCGg -3'
miRNA:   3'- uUAGCU-GUUC-CGC--CGGGCG--CA-GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 12464 0.66 0.384627
Target:  5'- cGUCGGCc-GGCacGCCCGgGUCGUCa -3'
miRNA:   3'- uUAGCUGuuCCGc-CGGGCgCAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 38455 0.67 0.367412
Target:  5'- uGUCGcCGAcGCGGCguuucgcgaaCCGCGUgCGCCGa -3'
miRNA:   3'- uUAGCuGUUcCGCCG----------GGCGCA-GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36073 0.67 0.350734
Target:  5'- --aCGACGAGcUGGCCCGUGaCGCgGc -3'
miRNA:   3'- uuaGCUGUUCcGCCGGGCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 17704 0.67 0.350734
Target:  5'- -cUCGACAAGGUaGGCgcagCCGUGaCGUCGa -3'
miRNA:   3'- uuAGCUGUUCCG-CCG----GGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 7380 0.67 0.350734
Target:  5'- cAUCGACGGGGCGaGCgacaugaCGCGU-GCCu -3'
miRNA:   3'- uUAGCUGUUCCGC-CGg------GCGCAgCGGc -5'
16997 5' -60.5 NC_004333.2 + 23976 0.67 0.3426
Target:  5'- --gCGGCcAGGCGGCCgGUaccGUCGCa- -3'
miRNA:   3'- uuaGCUGuUCCGCCGGgCG---CAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 17877 0.67 0.3426
Target:  5'- uGUCGcaggcGCGAcGGCGGCCaGC-UCGCCGu -3'
miRNA:   3'- uUAGC-----UGUU-CCGCCGGgCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 44956 0.67 0.3426
Target:  5'- --cCGGCGucaucgGGGCGGgCgGCG-CGCCGg -3'
miRNA:   3'- uuaGCUGU------UCCGCCgGgCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 26792 0.67 0.3426
Target:  5'- --cCGACGAGuaGGCgCGCuucGUUGCCGa -3'
miRNA:   3'- uuaGCUGUUCcgCCGgGCG---CAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.