miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16999 5' -55.7 NC_004333.2 + 29720 0.66 0.63705
Target:  5'- --gUGCCGGguuGCGCGAacuuuuUGAACgCGCu -3'
miRNA:   3'- uauGCGGCCguuCGCGCU------ACUUG-GCG- -5'
16999 5' -55.7 NC_004333.2 + 39951 0.66 0.648198
Target:  5'- -cGCGCgGGCcGGCGUcAUccuGCCGCg -3'
miRNA:   3'- uaUGCGgCCGuUCGCGcUAcu-UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 19039 0.66 0.648198
Target:  5'- cUACGCCGauGCGauGGCG-GAUGcuGACCGUc -3'
miRNA:   3'- uAUGCGGC--CGU--UCGCgCUAC--UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 22768 0.66 0.658219
Target:  5'- --cCGCCGGCAcgcugcaGGCGCGcuc-GCCGg -3'
miRNA:   3'- uauGCGGCCGU-------UCGCGCuacuUGGCg -5'
16999 5' -55.7 NC_004333.2 + 24643 0.66 0.659331
Target:  5'- cUACGCagauCGGCGgcuacccgaaaGGCGCGGU--GCUGCa -3'
miRNA:   3'- uAUGCG----GCCGU-----------UCGCGCUAcuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 20943 0.66 0.603618
Target:  5'- -gGCGCaGGCAGacGCucgaucacgacgGCGAUGuACCGCg -3'
miRNA:   3'- uaUGCGgCCGUU--CG------------CGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 12082 0.66 0.603618
Target:  5'- cGUACG-UGGCuGGCGCGcagcGCCGCg -3'
miRNA:   3'- -UAUGCgGCCGuUCGCGCuacuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 29946 0.68 0.526891
Target:  5'- cGUGcCGUCGGCGucguagauuuccGGCGCGuauUGcgauGCCGCg -3'
miRNA:   3'- -UAU-GCGGCCGU------------UCGCGCu--ACu---UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 27437 0.68 0.536585
Target:  5'- -cGCGUCGGCGAuguccggcagcgcGCGCGccGucaucACCGCa -3'
miRNA:   3'- uaUGCGGCCGUU-------------CGCGCuaCu----UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 17026 0.68 0.537666
Target:  5'- -gAUGCCaaGGCGGGCGgCGAUGcauUCGCc -3'
miRNA:   3'- uaUGCGG--CCGUUCGC-GCUACuu-GGCG- -5'
16999 5' -55.7 NC_004333.2 + 39247 0.67 0.548516
Target:  5'- -aGCGCCGGC--GCGaaCGA--AGCCGCg -3'
miRNA:   3'- uaUGCGGCCGuuCGC--GCUacUUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 31148 0.67 0.556152
Target:  5'- cAUugGCCuGCAgcgugcacgagucgAGCGCGgcGAcggcguauGCCGCg -3'
miRNA:   3'- -UAugCGGcCGU--------------UCGCGCuaCU--------UGGCG- -5'
16999 5' -55.7 NC_004333.2 + 8492 0.67 0.559434
Target:  5'- -gGCGCaGGCAGGC-CGAccagGAAgCGCg -3'
miRNA:   3'- uaUGCGgCCGUUCGcGCUa---CUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 9397 0.67 0.559434
Target:  5'- -cAUGCCggacauuucGGCAAGCucgGCGAUGccgcucguGGCCGCu -3'
miRNA:   3'- uaUGCGG---------CCGUUCG---CGCUAC--------UUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 35796 0.67 0.559434
Target:  5'- -cGCGCCgGGCgGGGCGCGGgcGGgCGCu -3'
miRNA:   3'- uaUGCGG-CCG-UUCGCGCUacUUgGCG- -5'
16999 5' -55.7 NC_004333.2 + 37620 0.67 0.559434
Target:  5'- gAUGCGCCcGauaAAcGCGCGAUG-GCCGUc -3'
miRNA:   3'- -UAUGCGGcCg--UU-CGCGCUACuUGGCG- -5'
16999 5' -55.7 NC_004333.2 + 44952 0.67 0.567112
Target:  5'- cUGC-CCGGCGucaucggggcgggcGGCGCGccGGGCCGg -3'
miRNA:   3'- uAUGcGGCCGU--------------UCGCGCuaCUUGGCg -5'
16999 5' -55.7 NC_004333.2 + 32706 0.67 0.581439
Target:  5'- uUGCGCuCGGCAcgccaAGCGCGccGAucgaccCCGUu -3'
miRNA:   3'- uAUGCG-GCCGU-----UCGCGCuaCUu-----GGCG- -5'
16999 5' -55.7 NC_004333.2 + 3149 0.67 0.592512
Target:  5'- -cGCGCCGccaGCGccacGCGCGGUcGAGCgGCc -3'
miRNA:   3'- uaUGCGGC---CGUu---CGCGCUA-CUUGgCG- -5'
16999 5' -55.7 NC_004333.2 + 9273 0.66 0.603618
Target:  5'- uGUugGCCGuGCcgaucAGCGCGAagcggcgcgGGugCGCg -3'
miRNA:   3'- -UAugCGGC-CGu----UCGCGCUa--------CUugGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.