Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 44236 | 1.09 | 0.000482 |
Target: 5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3' miRNA: 3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 25714 | 0.8 | 0.06621 |
Target: 5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCGGUCGGc -3' miRNA: 3'- gUCUUGCCG----------CGGUUGGa---CGGCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 8979 | 0.75 | 0.138088 |
Target: 5'- gGGAGCGcGgGCCGugCUGCCGGUgcagcgcgcgcagcaCGGg -3' miRNA: 3'- gUCUUGC-CgCGGUugGACGGCCA---------------GCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 19549 | 0.75 | 0.140359 |
Target: 5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3' miRNA: 3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 23661 | 0.74 | 0.183555 |
Target: 5'- gCGGAACGcCGCCGGCCU-CCGG-CGGc -3' miRNA: 3'- -GUCUUGCcGCGGUUGGAcGGCCaGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 43517 | 0.72 | 0.214804 |
Target: 5'- aAGAccCGcGCGCCGGCCUGCCcGUCGc -3' miRNA: 3'- gUCUu-GC-CGCGGUUGGACGGcCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 20445 | 0.72 | 0.214804 |
Target: 5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3' miRNA: 3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 41824 | 0.72 | 0.226193 |
Target: 5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3' miRNA: 3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 454 | 0.72 | 0.23809 |
Target: 5'- gAGGccACGGCGCgCGACgUGCCGG-CGa -3' miRNA: 3'- gUCU--UGCCGCG-GUUGgACGGCCaGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 44445 | 0.7 | 0.290962 |
Target: 5'- -----aGGCGCuCGGCCUGCCGGUg-- -3' miRNA: 3'- gucuugCCGCG-GUUGGACGGCCAgcc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 45236 | 0.7 | 0.298182 |
Target: 5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3' miRNA: 3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 3925 | 0.7 | 0.305541 |
Target: 5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3' miRNA: 3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 2783 | 0.7 | 0.305541 |
Target: 5'- cCAGGucuGCGGCcuuGCCGACCUggcGCUGGUCu- -3' miRNA: 3'- -GUCU---UGCCG---CGGUUGGA---CGGCCAGcc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 17658 | 0.7 | 0.320673 |
Target: 5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3' miRNA: 3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 11832 | 0.7 | 0.327663 |
Target: 5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3' miRNA: 3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 39123 | 0.7 | 0.328447 |
Target: 5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3' miRNA: 3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 10016 | 0.7 | 0.328447 |
Target: 5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3' miRNA: 3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 46698 | 0.7 | 0.328447 |
Target: 5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3' miRNA: 3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 37454 | 0.69 | 0.336359 |
Target: 5'- -cGAACGGCGCCGACauuCCGG-CGc -3' miRNA: 3'- guCUUGCCGCGGUUGgacGGCCaGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 28907 | 0.69 | 0.336359 |
Target: 5'- gCAGGcCGGCGCauACUUGCC-GUCGGu -3' miRNA: 3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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