miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 25714 0.8 0.06621
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCGGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 31965 0.68 0.422924
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 8648 0.67 0.441779
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 32828 0.66 0.546592
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 41824 0.72 0.226193
Target:  5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3'
miRNA:   3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 44445 0.7 0.290962
Target:  5'- -----aGGCGCuCGGCCUGCCGGUg-- -3'
miRNA:   3'- gucuugCCGCG-GUUGGACGGCCAgcc -5'
17003 5' -58.5 NC_004333.2 + 3925 0.7 0.305541
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 11832 0.7 0.327663
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 37454 0.69 0.336359
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 2753 0.68 0.404561
Target:  5'- gAGAucGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 2391 0.69 0.369384
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 28907 0.69 0.336359
Target:  5'- gCAGGcCGGCGCauACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 19549 0.75 0.140359
Target:  5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3'
miRNA:   3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 44377 0.69 0.377114
Target:  5'- aCAGGugcgcugcucgGCGGCGCgugcgcgguacaaCGGCCUGCCGGgcUCGc -3'
miRNA:   3'- -GUCU-----------UGCCGCG-------------GUUGGACGGCC--AGCc -5'
17003 5' -58.5 NC_004333.2 + 23661 0.74 0.183555
Target:  5'- gCGGAACGcCGCCGGCCU-CCGG-CGGc -3'
miRNA:   3'- -GUCUUGCcGCGGUUGGAcGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 46698 0.7 0.328447
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 45822 0.68 0.39557
Target:  5'- aGGucUGGCGCgUGACCUGUucUGGUCGGu -3'
miRNA:   3'- gUCuuGCCGCG-GUUGGACG--GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 31180 0.67 0.440825
Target:  5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3'
miRNA:   3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 20445 0.72 0.214804
Target:  5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3'
miRNA:   3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 45236 0.7 0.298182
Target:  5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3'
miRNA:   3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.