Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 45568 | 0.67 | 0.480859 |
Target: 5'- uCGGugcucAUGGCGCuCGACCaGCCcGGUCGc -3' miRNA: 3'- -GUCu----UGCCGCG-GUUGGaCGG-CCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 32828 | 0.66 | 0.546592 |
Target: 5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3' miRNA: 3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 37665 | 0.69 | 0.360923 |
Target: 5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3' miRNA: 3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 25408 | 0.67 | 0.490891 |
Target: 5'- -cGAGC-GCGCCugcAGCgUGCCGG-CGGc -3' miRNA: 3'- guCUUGcCGCGG---UUGgACGGCCaGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 30500 | 0.66 | 0.50102 |
Target: 5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3' miRNA: 3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 31180 | 0.67 | 0.440825 |
Target: 5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3' miRNA: 3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 27281 | 0.66 | 0.50102 |
Target: 5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3' miRNA: 3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 28759 | 0.67 | 0.490891 |
Target: 5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3' miRNA: 3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 27665 | 0.68 | 0.39557 |
Target: 5'- -cGAGCGGCGCggCGGCg-GCCGGcagCGGu -3' miRNA: 3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 454 | 0.72 | 0.23809 |
Target: 5'- gAGGccACGGCGCgCGACgUGCCGG-CGa -3' miRNA: 3'- gUCU--UGCCGCG-GUUGgACGGCCaGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 39954 | 0.66 | 0.53193 |
Target: 5'- gCGGGcCGGCGUCAuCCUGCCGcGcagCGu -3' miRNA: 3'- -GUCUuGCCGCGGUuGGACGGC-Ca--GCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 8979 | 0.75 | 0.138088 |
Target: 5'- gGGAGCGcGgGCCGugCUGCCGGUgcagcgcgcgcagcaCGGg -3' miRNA: 3'- gUCUUGC-CgCGGUugGACGGCCA---------------GCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 37106 | 0.66 | 0.521545 |
Target: 5'- cCGGAAUGG-GCCGcacGCCcGgCGGUCGa -3' miRNA: 3'- -GUCUUGCCgCGGU---UGGaCgGCCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 44236 | 1.09 | 0.000482 |
Target: 5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3' miRNA: 3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 9387 | 0.66 | 0.521545 |
Target: 5'- ---cGCGGCGCC--CCaUGCCGGacauuUCGGc -3' miRNA: 3'- gucuUGCCGCGGuuGG-ACGGCC-----AGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 33450 | 0.69 | 0.352598 |
Target: 5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3' miRNA: 3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 18176 | 0.67 | 0.480859 |
Target: 5'- -cGAGCGGCGCCGcauggugcucgcGCUcggcGCCGGU-GGc -3' miRNA: 3'- guCUUGCCGCGGU------------UGGa---CGGCCAgCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 43517 | 0.72 | 0.214804 |
Target: 5'- aAGAccCGcGCGCCGGCCUGCCcGUCGc -3' miRNA: 3'- gUCUu-GC-CGCGGUUGGACGGcCAGCc -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 749 | 0.68 | 0.436072 |
Target: 5'- aCGGAuUGGCGCCGGCgagcggcgauguagCUGCgauugcuugcgcguCGGUCGGc -3' miRNA: 3'- -GUCUuGCCGCGGUUG--------------GACG--------------GCCAGCC- -5' |
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17003 | 5' | -58.5 | NC_004333.2 | + | 8911 | 0.68 | 0.432292 |
Target: 5'- -cGAuCGcGCGCgCGugcGCCUGCCGGccgcUCGGg -3' miRNA: 3'- guCUuGC-CGCG-GU---UGGACGGCC----AGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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