miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 19549 0.75 0.140359
Target:  5'- -uGAugGGCGCCggUC-GCaCGGUCGGc -3'
miRNA:   3'- guCUugCCGCGGuuGGaCG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 20445 0.72 0.214804
Target:  5'- --cGGCGGCGCgaAGCCUgcGCCGGUCGu -3'
miRNA:   3'- gucUUGCCGCGg-UUGGA--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 23151 0.66 0.521545
Target:  5'- -cGAuguUGGUGCCAucGCCcgucacGUCGGUCGGu -3'
miRNA:   3'- guCUu--GCCGCGGU--UGGa-----CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 23661 0.74 0.183555
Target:  5'- gCGGAACGcCGCCGGCCU-CCGG-CGGc -3'
miRNA:   3'- -GUCUUGCcGCGGUUGGAcGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 25408 0.67 0.490891
Target:  5'- -cGAGC-GCGCCugcAGCgUGCCGG-CGGc -3'
miRNA:   3'- guCUUGcCGCGG---UUGgACGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 25714 0.8 0.06621
Target:  5'- gAGAAUGGCuugcucgccgGCCAGCUgcagGCCGGUCGGc -3'
miRNA:   3'- gUCUUGCCG----------CGGUUGGa---CGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 27281 0.66 0.50102
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 27665 0.68 0.39557
Target:  5'- -cGAGCGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
17003 5' -58.5 NC_004333.2 + 28759 0.67 0.490891
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
17003 5' -58.5 NC_004333.2 + 28907 0.69 0.336359
Target:  5'- gCAGGcCGGCGCauACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 29855 0.66 0.515352
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 30500 0.66 0.50102
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
17003 5' -58.5 NC_004333.2 + 31180 0.67 0.440825
Target:  5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3'
miRNA:   3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 31965 0.68 0.422924
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 32828 0.66 0.546592
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 33450 0.69 0.352598
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
17003 5' -58.5 NC_004333.2 + 37106 0.66 0.521545
Target:  5'- cCGGAAUGG-GCCGcacGCCcGgCGGUCGa -3'
miRNA:   3'- -GUCUUGCCgCGGU---UGGaCgGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 37454 0.69 0.336359
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 37665 0.69 0.360923
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 39123 0.7 0.328447
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.