miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 454 0.72 0.23809
Target:  5'- gAGGccACGGCGCgCGACgUGCCGG-CGa -3'
miRNA:   3'- gUCU--UGCCGCG-GUUGgACGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 749 0.68 0.436072
Target:  5'- aCGGAuUGGCGCCGGCgagcggcgauguagCUGCgauugcuugcgcguCGGUCGGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUG--------------GACG--------------GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 1642 0.66 0.521545
Target:  5'- --cGGCGGCGUagcccugaauGCgCUGCgCGGUCGGa -3'
miRNA:   3'- gucUUGCCGCGgu--------UG-GACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 2391 0.69 0.369384
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 2753 0.68 0.404561
Target:  5'- gAGAucGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 2783 0.7 0.305541
Target:  5'- cCAGGucuGCGGCcuuGCCGACCUggcGCUGGUCu- -3'
miRNA:   3'- -GUCU---UGCCG---CGGUUGGA---CGGCCAGcc -5'
17003 5' -58.5 NC_004333.2 + 3925 0.7 0.305541
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 4882 0.67 0.441779
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
17003 5' -58.5 NC_004333.2 + 8648 0.67 0.441779
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 8911 0.68 0.432292
Target:  5'- -cGAuCGcGCGCgCGugcGCCUGCCGGccgcUCGGg -3'
miRNA:   3'- guCUuGC-CGCG-GU---UGGACGGCC----AGCC- -5'
17003 5' -58.5 NC_004333.2 + 8979 0.75 0.138088
Target:  5'- gGGAGCGcGgGCCGugCUGCCGGUgcagcgcgcgcagcaCGGg -3'
miRNA:   3'- gUCUUGC-CgCGGUugGACGGCCA---------------GCC- -5'
17003 5' -58.5 NC_004333.2 + 9387 0.66 0.521545
Target:  5'- ---cGCGGCGCC--CCaUGCCGGacauuUCGGc -3'
miRNA:   3'- gucuUGCCGCGGuuGG-ACGGCC-----AGCC- -5'
17003 5' -58.5 NC_004333.2 + 9948 0.66 0.542389
Target:  5'- -cGAACGGCGCgGcgcGCUUGCuCGacUCGGg -3'
miRNA:   3'- guCUUGCCGCGgU---UGGACG-GCc-AGCC- -5'
17003 5' -58.5 NC_004333.2 + 10016 0.7 0.328447
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 10503 0.66 0.521545
Target:  5'- -----gGGCcgGCCGACgaGCgGGUCGGg -3'
miRNA:   3'- gucuugCCG--CGGUUGgaCGgCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 11832 0.7 0.327663
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 17658 0.7 0.320673
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 17758 0.66 0.530889
Target:  5'- gCAGucgcuACGGCGCgCGAauucgguCCggcGCCGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUU-------GGa--CGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 17881 0.66 0.53193
Target:  5'- gCAGGcgcgACGGCgGCCAGCUcGCC-GUCGa -3'
miRNA:   3'- -GUCU----UGCCG-CGGUUGGaCGGcCAGCc -5'
17003 5' -58.5 NC_004333.2 + 18176 0.67 0.480859
Target:  5'- -cGAGCGGCGCCGcauggugcucgcGCUcggcGCCGGU-GGc -3'
miRNA:   3'- guCUUGCCGCGGU------------UGGa---CGGCCAgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.