Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 46698 | 0.7 | 0.328447 |
Target: 5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3' miRNA: 3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 45822 | 0.68 | 0.39557 |
Target: 5'- aGGucUGGCGCgUGACCUGUucUGGUCGGu -3' miRNA: 3'- gUCuuGCCGCG-GUUGGACG--GCCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 45568 | 0.67 | 0.480859 |
Target: 5'- uCGGugcucAUGGCGCuCGACCaGCCcGGUCGc -3' miRNA: 3'- -GUCu----UGCCGCG-GUUGGaCGG-CCAGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 45236 | 0.7 | 0.298182 |
Target: 5'- ----uCGGUGCCGACCUGuCCGGcaUCGa -3' miRNA: 3'- gucuuGCCGCGGUUGGAC-GGCC--AGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 44971 | 0.66 | 0.53193 |
Target: 5'- -cGGGCGGCGC--GCCggGCCGGcucacCGGc -3' miRNA: 3'- guCUUGCCGCGguUGGa-CGGCCa----GCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 44445 | 0.7 | 0.290962 |
Target: 5'- -----aGGCGCuCGGCCUGCCGGUg-- -3' miRNA: 3'- gucuugCCGCG-GUUGGACGGCCAgcc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 44377 | 0.69 | 0.377114 |
Target: 5'- aCAGGugcgcugcucgGCGGCGCgugcgcgguacaaCGGCCUGCCGGgcUCGc -3' miRNA: 3'- -GUCU-----------UGCCGCG-------------GUUGGACGGCC--AGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 44236 | 1.09 | 0.000482 |
Target: 5'- gCAGAACGGCGCCAACCUGCCGGUCGGc -3' miRNA: 3'- -GUCUUGCCGCGGUUGGACGGCCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 43517 | 0.72 | 0.214804 |
Target: 5'- aAGAccCGcGCGCCGGCCUGCCcGUCGc -3' miRNA: 3'- gUCUu-GC-CGCGGUUGGACGGcCAGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 41824 | 0.72 | 0.226193 |
Target: 5'- aCGGcacGACGGCGcCCGGCC-GCgagCGGUCGGg -3' miRNA: 3'- -GUC---UUGCCGC-GGUUGGaCG---GCCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 39954 | 0.66 | 0.53193 |
Target: 5'- gCGGGcCGGCGUCAuCCUGCCGcGcagCGu -3' miRNA: 3'- -GUCUuGCCGCGGUuGGACGGC-Ca--GCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 39123 | 0.7 | 0.328447 |
Target: 5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3' miRNA: 3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 37665 | 0.69 | 0.360923 |
Target: 5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3' miRNA: 3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 37454 | 0.69 | 0.336359 |
Target: 5'- -cGAACGGCGCCGACauuCCGG-CGc -3' miRNA: 3'- guCUUGCCGCGGUUGgacGGCCaGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 37106 | 0.66 | 0.521545 |
Target: 5'- cCGGAAUGG-GCCGcacGCCcGgCGGUCGa -3' miRNA: 3'- -GUCUUGCCgCGGU---UGGaCgGCCAGCc -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 33450 | 0.69 | 0.352598 |
Target: 5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3' miRNA: 3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 32828 | 0.66 | 0.546592 |
Target: 5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3' miRNA: 3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 31965 | 0.68 | 0.422924 |
Target: 5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3' miRNA: 3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 31180 | 0.67 | 0.440825 |
Target: 5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3' miRNA: 3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5' |
|||||||
17003 | 5' | -58.5 | NC_004333.2 | + | 30500 | 0.66 | 0.50102 |
Target: 5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3' miRNA: 3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home