miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 33450 0.69 0.352598
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
17003 5' -58.5 NC_004333.2 + 37665 0.69 0.360923
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 2391 0.69 0.369384
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 44377 0.69 0.377114
Target:  5'- aCAGGugcgcugcucgGCGGCGCgugcgcgguacaaCGGCCUGCCGGgcUCGc -3'
miRNA:   3'- -GUCU-----------UGCCGCG-------------GUUGGACGGCC--AGCc -5'
17003 5' -58.5 NC_004333.2 + 27665 0.68 0.39557
Target:  5'- -cGAGCGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
17003 5' -58.5 NC_004333.2 + 45822 0.68 0.39557
Target:  5'- aGGucUGGCGCgUGACCUGUucUGGUCGGu -3'
miRNA:   3'- gUCuuGCCGCG-GUUGGACG--GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 2753 0.68 0.404561
Target:  5'- gAGAucGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 31965 0.68 0.422924
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 8911 0.68 0.432292
Target:  5'- -cGAuCGcGCGCgCGugcGCCUGCCGGccgcUCGGg -3'
miRNA:   3'- guCUuGC-CGCG-GU---UGGACGGCC----AGCC- -5'
17003 5' -58.5 NC_004333.2 + 749 0.68 0.436072
Target:  5'- aCGGAuUGGCGCCGGCgagcggcgauguagCUGCgauugcuugcgcguCGGUCGGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUG--------------GACG--------------GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 31180 0.67 0.440825
Target:  5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3'
miRNA:   3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 4882 0.67 0.441779
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
17003 5' -58.5 NC_004333.2 + 8648 0.67 0.441779
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 18176 0.67 0.480859
Target:  5'- -cGAGCGGCGCCGcauggugcucgcGCUcggcGCCGGU-GGc -3'
miRNA:   3'- guCUUGCCGCGGU------------UGGa---CGGCCAgCC- -5'
17003 5' -58.5 NC_004333.2 + 45568 0.67 0.480859
Target:  5'- uCGGugcucAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUUGGaCGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 25408 0.67 0.490891
Target:  5'- -cGAGC-GCGCCugcAGCgUGCCGG-CGGc -3'
miRNA:   3'- guCUUGcCGCGG---UUGgACGGCCaGCC- -5'
17003 5' -58.5 NC_004333.2 + 28759 0.67 0.490891
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
17003 5' -58.5 NC_004333.2 + 30500 0.66 0.50102
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
17003 5' -58.5 NC_004333.2 + 27281 0.66 0.50102
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 29855 0.66 0.515352
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.