miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 5' -58.5 NC_004333.2 + 31180 0.67 0.440825
Target:  5'- cCAGAcgGCGcGCcguacucgacaacGCCGACauuUGCCGGUUGGu -3'
miRNA:   3'- -GUCU--UGC-CG-------------CGGUUGg--ACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 749 0.68 0.436072
Target:  5'- aCGGAuUGGCGCCGGCgagcggcgauguagCUGCgauugcuugcgcguCGGUCGGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUG--------------GACG--------------GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 8911 0.68 0.432292
Target:  5'- -cGAuCGcGCGCgCGugcGCCUGCCGGccgcUCGGg -3'
miRNA:   3'- guCUuGC-CGCG-GU---UGGACGGCC----AGCC- -5'
17003 5' -58.5 NC_004333.2 + 31965 0.68 0.422924
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 2753 0.68 0.404561
Target:  5'- gAGAucGCGGcCGCCG---UGCCGGUCGc -3'
miRNA:   3'- gUCU--UGCC-GCGGUuggACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 27665 0.68 0.39557
Target:  5'- -cGAGCGGCGCggCGGCg-GCCGGcagCGGu -3'
miRNA:   3'- guCUUGCCGCG--GUUGgaCGGCCa--GCC- -5'
17003 5' -58.5 NC_004333.2 + 45822 0.68 0.39557
Target:  5'- aGGucUGGCGCgUGACCUGUucUGGUCGGu -3'
miRNA:   3'- gUCuuGCCGCG-GUUGGACG--GCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 44377 0.69 0.377114
Target:  5'- aCAGGugcgcugcucgGCGGCGCgugcgcgguacaaCGGCCUGCCGGgcUCGc -3'
miRNA:   3'- -GUCU-----------UGCCGCG-------------GUUGGACGGCC--AGCc -5'
17003 5' -58.5 NC_004333.2 + 2391 0.69 0.369384
Target:  5'- cCAuGACGGCGCCGGCggucGCCuGGUCGc -3'
miRNA:   3'- -GUcUUGCCGCGGUUGga--CGG-CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 37665 0.69 0.360923
Target:  5'- -cGAGCGcGCGcCCGACCcGCUcGUCGGc -3'
miRNA:   3'- guCUUGC-CGC-GGUUGGaCGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 33450 0.69 0.352598
Target:  5'- uCAGAuCGGCuacaaucCCGACCUGCCGcUUGGc -3'
miRNA:   3'- -GUCUuGCCGc------GGUUGGACGGCcAGCC- -5'
17003 5' -58.5 NC_004333.2 + 37454 0.69 0.336359
Target:  5'- -cGAACGGCGCCGACauuCCGG-CGc -3'
miRNA:   3'- guCUUGCCGCGGUUGgacGGCCaGCc -5'
17003 5' -58.5 NC_004333.2 + 28907 0.69 0.336359
Target:  5'- gCAGGcCGGCGCauACUUGCC-GUCGGu -3'
miRNA:   3'- -GUCUuGCCGCGguUGGACGGcCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 46698 0.7 0.328447
Target:  5'- --uGGCGGCGCgcuacaaaAAgCUGCCGGUCGa -3'
miRNA:   3'- gucUUGCCGCGg-------UUgGACGGCCAGCc -5'
17003 5' -58.5 NC_004333.2 + 10016 0.7 0.328447
Target:  5'- -cGAGCGGCguGCCAagAUCggcgGCCGgGUCGGc -3'
miRNA:   3'- guCUUGCCG--CGGU--UGGa---CGGC-CAGCC- -5'
17003 5' -58.5 NC_004333.2 + 39123 0.7 0.328447
Target:  5'- gCAGAuCGGCGUCGACgUGUCgcaGGUCGc -3'
miRNA:   3'- -GUCUuGCCGCGGUUGgACGG---CCAGCc -5'
17003 5' -58.5 NC_004333.2 + 11832 0.7 0.327663
Target:  5'- aCGGcGCGcuccagcuuGCGCCGGuacaucgcuuccgUCUGCCGGUCGGc -3'
miRNA:   3'- -GUCuUGC---------CGCGGUU-------------GGACGGCCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 17658 0.7 0.320673
Target:  5'- gGGAugGGacaaGCUGGCCggcaGCCuGGUCGGc -3'
miRNA:   3'- gUCUugCCg---CGGUUGGa---CGG-CCAGCC- -5'
17003 5' -58.5 NC_004333.2 + 2783 0.7 0.305541
Target:  5'- cCAGGucuGCGGCcuuGCCGACCUggcGCUGGUCu- -3'
miRNA:   3'- -GUCU---UGCCG---CGGUUGGA---CGGCCAGcc -5'
17003 5' -58.5 NC_004333.2 + 3925 0.7 0.305541
Target:  5'- gCAGcGGCGGCagGCCGACCgGCaGGUUGGc -3'
miRNA:   3'- -GUC-UUGCCG--CGGUUGGaCGgCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.