miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 3' -56.9 NC_004333.2 + 47987 0.68 0.465912
Target:  5'- aGCcGGCGgGCGCacgGGCAguggaCUCGCGCCa -3'
miRNA:   3'- -UGcUUGCaCGCG---CCGUag---GAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 46825 0.76 0.162057
Target:  5'- cACGAACGUGCuCGGCAUCgaacggcacaagcugCUCaucgACGCCg -3'
miRNA:   3'- -UGCUUGCACGcGCCGUAG---------------GAG----UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 46185 0.66 0.624525
Target:  5'- gGCGAcCGaGgGCugGGCGcgUCUCGCGCCg -3'
miRNA:   3'- -UGCUuGCaCgCG--CCGUa-GGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 46162 0.7 0.390101
Target:  5'- uGCGGcCGUGaCGUcgGGCAUCaucCGCGCCg -3'
miRNA:   3'- -UGCUuGCAC-GCG--CCGUAGga-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 46112 0.66 0.580946
Target:  5'- cCGAGCGcggUGCGCgcuacGGCAaguUCgaggaUCACGCCg -3'
miRNA:   3'- uGCUUGC---ACGCG-----CCGU---AGg----AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 45958 0.7 0.372446
Target:  5'- aGCGGAUGUGuCGCGGCgaggcgugguGUCCcggccugccacUCgGCGCCg -3'
miRNA:   3'- -UGCUUGCAC-GCGCCG----------UAGG-----------AG-UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 45554 0.66 0.624525
Target:  5'- gAUGAACc-GCGCGGUcgGUCUgUCGCGCa -3'
miRNA:   3'- -UGCUUGcaCGCGCCG--UAGG-AGUGCGg -5'
17004 3' -56.9 NC_004333.2 + 45105 0.69 0.446225
Target:  5'- gGCGAuacucgACGccugucUGCGCGGCGa--UCGCGCCu -3'
miRNA:   3'- -UGCU------UGC------ACGCGCCGUaggAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 44627 0.71 0.307414
Target:  5'- cCGAcGCGcUGCGCGGCAccgcguugaUCCcgcuUUACGCCg -3'
miRNA:   3'- uGCU-UGC-ACGCGCCGU---------AGG----AGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 44392 0.68 0.48604
Target:  5'- gGCGGcGCGUGCGCGGUAcaacggCCUgccgggcucgCugGCUg -3'
miRNA:   3'- -UGCU-UGCACGCGCCGUa-----GGA----------GugCGG- -5'
17004 3' -56.9 NC_004333.2 + 43927 1.12 0.000394
Target:  5'- cACGAACGUGCGCGGCAUCCUCACGCCg -3'
miRNA:   3'- -UGCUUGCACGCGCCGUAGGAGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 43444 0.67 0.548671
Target:  5'- gACGGACGcGCGCaucGCGcgCUUgCGCGCCg -3'
miRNA:   3'- -UGCUUGCaCGCGc--CGUa-GGA-GUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 43220 0.66 0.570135
Target:  5'- uACGAAccucgugcCGUGCGUucGCAUgCC-CGCGCCg -3'
miRNA:   3'- -UGCUU--------GCACGCGc-CGUA-GGaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 41848 0.73 0.257938
Target:  5'- uCGcGCG-GUGCGGuCGUCCUCACGgCu -3'
miRNA:   3'- uGCuUGCaCGCGCC-GUAGGAGUGCgG- -5'
17004 3' -56.9 NC_004333.2 + 40869 0.68 0.465912
Target:  5'- gGCGAugGUcGCGCgacucGGUAUCUaCuGCGCCg -3'
miRNA:   3'- -UGCUugCA-CGCG-----CCGUAGGaG-UGCGG- -5'
17004 3' -56.9 NC_004333.2 + 40014 0.67 0.516976
Target:  5'- cGCGAugGa-CGCGGCcgaCCUguCGCCa -3'
miRNA:   3'- -UGCUugCacGCGCCGua-GGAguGCGG- -5'
17004 3' -56.9 NC_004333.2 + 39480 0.66 0.570135
Target:  5'- gGCGAagAUGgaagcGCGCGGCGUaacggaCgaCACGCCg -3'
miRNA:   3'- -UGCU--UGCa----CGCGCCGUA------GgaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 39300 0.68 0.48604
Target:  5'- --cAAgGUGCGCGGCuaaC-CGCGCCg -3'
miRNA:   3'- ugcUUgCACGCGCCGuagGaGUGCGG- -5'
17004 3' -56.9 NC_004333.2 + 39183 0.68 0.456011
Target:  5'- cGCGAACGccGCGuCGGUcgCCgcCGCGCa -3'
miRNA:   3'- -UGCUUGCa-CGC-GCCGuaGGa-GUGCGg -5'
17004 3' -56.9 NC_004333.2 + 38711 0.72 0.2783
Target:  5'- gGCG-GCG-GUGCGGCA-CC-CGCGCCu -3'
miRNA:   3'- -UGCuUGCaCGCGCCGUaGGaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.