miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 43961 1.09 0.001386
Target:  5'- uCGAGCGUCAACGCGCAGCUGCAAAUCc -3'
miRNA:   3'- -GCUCGCAGUUGCGCGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 45219 0.9 0.032527
Target:  5'- aCGGGCGUCAcgcuCGCGCAGCUGCAGGg- -3'
miRNA:   3'- -GCUCGCAGUu---GCGCGUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 3688 0.8 0.149122
Target:  5'- uGAGcCGUC-GCGuCGUAGCUGCGGAUCg -3'
miRNA:   3'- gCUC-GCAGuUGC-GCGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 4766 0.79 0.162452
Target:  5'- cCGAGCGUCugccuGCGCggGCGGCUGCGGGa- -3'
miRNA:   3'- -GCUCGCAGu----UGCG--CGUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 2268 0.76 0.273897
Target:  5'- uCGAGCG-CAGCGCGUuuGCcgucgGCAAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46344 0.74 0.345199
Target:  5'- gCGGGCGcCGuuAUGCGCcGCUGCGGAUUu -3'
miRNA:   3'- -GCUCGCaGU--UGCGCGuCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 18549 0.73 0.371754
Target:  5'- cCGGGUGcggCAGCcgGCGCGGCgGCGAAUCc -3'
miRNA:   3'- -GCUCGCa--GUUG--CGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 3172 0.73 0.409266
Target:  5'- uCGAGCGgccggaCAGCGCGCcGUgGUAGAUCg -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCGuCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 28679 0.73 0.409266
Target:  5'- aCGAGCGccgcCAGCGCGCcAGC-GCcGAUCg -3'
miRNA:   3'- -GCUCGCa---GUUGCGCG-UCGaCGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 26657 0.72 0.4389
Target:  5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3'
miRNA:   3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5'
17004 5' -52.6 NC_004333.2 + 39011 0.72 0.449048
Target:  5'- aCGAaCGcaAGCGCGCAGCUGC-GGUCg -3'
miRNA:   3'- -GCUcGCagUUGCGCGUCGACGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46925 0.72 0.469723
Target:  5'- gCGAGCGcCGcgaagccucGCGCGCAGCcaagGCGGcgCg -3'
miRNA:   3'- -GCUCGCaGU---------UGCGCGUCGa---CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 16807 0.71 0.490874
Target:  5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3'
miRNA:   3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 37190 0.71 0.490874
Target:  5'- -aAGCGgcUUAACGUGCAGCgGCAGGUUc -3'
miRNA:   3'- gcUCGC--AGUUGCGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46142 0.71 0.500536
Target:  5'- gCGGGCGUCGACGUgaucgauGCGGCcGUGAcGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCG-------CGUCGaCGUU-UAG- -5'
17004 5' -52.6 NC_004333.2 + 32307 0.71 0.505939
Target:  5'- aCGuGCGUCAgcaggucggucacgaGCGCGUgcacGGCUGcCGGGUCg -3'
miRNA:   3'- -GCuCGCAGU---------------UGCGCG----UCGAC-GUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2977 0.71 0.512456
Target:  5'- cCGGGCuUCGugGCGCGgacagcugccGCUGCGcAUCa -3'
miRNA:   3'- -GCUCGcAGUugCGCGU----------CGACGUuUAG- -5'
17004 5' -52.6 NC_004333.2 + 11884 0.7 0.531103
Target:  5'- uCGGGCGgcgcguaucgCAugGCGCAggacgucgcgugucGCUGCAuGUCg -3'
miRNA:   3'- -GCUCGCa---------GUugCGCGU--------------CGACGUuUAG- -5'
17004 5' -52.6 NC_004333.2 + 21335 0.7 0.553345
Target:  5'- cCGAGCG-CGACGCGaCAgcacucgcuacgacGCUGCAGGc- -3'
miRNA:   3'- -GCUCGCaGUUGCGC-GU--------------CGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 16879 0.7 0.556706
Target:  5'- -cGGCGUCGGCGCaGguGCgGCcGGUCu -3'
miRNA:   3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.