miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 3688 0.8 0.149122
Target:  5'- uGAGcCGUC-GCGuCGUAGCUGCGGAUCg -3'
miRNA:   3'- gCUC-GCAGuUGC-GCGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 9930 0.68 0.681871
Target:  5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3'
miRNA:   3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5'
17004 5' -52.6 NC_004333.2 + 46112 0.68 0.693172
Target:  5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3'
miRNA:   3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 3540 0.66 0.810488
Target:  5'- -aAGCGggaUCAACGCGguGCcgcGCAGcgCg -3'
miRNA:   3'- gcUCGC---AGUUGCGCguCGa--CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 26657 0.72 0.4389
Target:  5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3'
miRNA:   3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5'
17004 5' -52.6 NC_004333.2 + 46925 0.72 0.469723
Target:  5'- gCGAGCGcCGcgaagccucGCGCGCAGCcaagGCGGcgCg -3'
miRNA:   3'- -GCUCGCaGU---------UGCGCGUCGa---CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 25834 0.7 0.556706
Target:  5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3'
miRNA:   3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 22902 0.7 0.567951
Target:  5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3'
miRNA:   3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 20957 0.69 0.613401
Target:  5'- aCGGGcCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- -GCUC-GCa---GU---UGCGCGUCGa---CGUUUAg -5'
17004 5' -52.6 NC_004333.2 + 36325 0.68 0.670517
Target:  5'- cCGGGCGUCGcauCGCcuaCGGUUGCAAGa- -3'
miRNA:   3'- -GCUCGCAGUu--GCGc--GUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 25407 0.69 0.636271
Target:  5'- gCGAGCGcgccugCAGCGUGCcGGCgGCGGccGUCa -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCG-UCGaCGUU--UAG- -5'
17004 5' -52.6 NC_004333.2 + 40717 0.69 0.601987
Target:  5'- gCGAuCGUCAcCG-GCGGCgGCAAGUCg -3'
miRNA:   3'- -GCUcGCAGUuGCgCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2268 0.76 0.273897
Target:  5'- uCGAGCG-CAGCGCGUuuGCcgucgGCAAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 32095 0.68 0.659125
Target:  5'- -cGGCGUCGGCGCGUucAGUgacgGCAGuUCc -3'
miRNA:   3'- gcUCGCAGUUGCGCG--UCGa---CGUUuAG- -5'
17004 5' -52.6 NC_004333.2 + 46344 0.74 0.345199
Target:  5'- gCGGGCGcCGuuAUGCGCcGCUGCGGAUUu -3'
miRNA:   3'- -GCUCGCaGU--UGCGCGuCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2931 0.69 0.5906
Target:  5'- uGAcCGUCAACGUGCcGCUGUAGc-- -3'
miRNA:   3'- gCUcGCAGUUGCGCGuCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 7081 0.68 0.670517
Target:  5'- uGA-CGUCu-CGCGCAGUUGCGuacauAUCg -3'
miRNA:   3'- gCUcGCAGuuGCGCGUCGACGUu----UAG- -5'
17004 5' -52.6 NC_004333.2 + 2346 0.68 0.693172
Target:  5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3'
miRNA:   3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 18549 0.73 0.371754
Target:  5'- cCGGGUGcggCAGCcgGCGCGGCgGCGAAUCc -3'
miRNA:   3'- -GCUCGCa--GUUG--CGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 32307 0.71 0.505939
Target:  5'- aCGuGCGUCAgcaggucggucacgaGCGCGUgcacGGCUGcCGGGUCg -3'
miRNA:   3'- -GCuCGCAGU---------------UGCGCG----UCGAC-GUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.