miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 31831 0.68 0.704411
Target:  5'- gCGAGa-UCAGCGUGUagAGCUGCAGc-- -3'
miRNA:   3'- -GCUCgcAGUUGCGCG--UCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 1958 0.67 0.748474
Target:  5'- gCGGGCcgccuuGUCGAuuUGCuGCAGUUGCGAGUUc -3'
miRNA:   3'- -GCUCG------CAGUU--GCG-CGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46112 0.68 0.693172
Target:  5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3'
miRNA:   3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2931 0.69 0.5906
Target:  5'- uGAcCGUCAACGUGCcGCUGUAGc-- -3'
miRNA:   3'- gCUcGCAGUUGCGCGuCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 8915 0.67 0.737617
Target:  5'- -uGGCGUCGAUGCGCGacGCgGCu--UCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGU--CGaCGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 22006 0.67 0.726646
Target:  5'- uCGGcGCGaaUCAGCGCGCGgGCguuuucucgacGCAGAUCa -3'
miRNA:   3'- -GCU-CGC--AGUUGCGCGU-CGa----------CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 39257 0.67 0.748474
Target:  5'- cCGAGCGgccggCAggcgcACGCGCGcGCgaucGCAGGUUg -3'
miRNA:   3'- -GCUCGCa----GU-----UGCGCGU-CGa---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 3540 0.66 0.810488
Target:  5'- -aAGCGggaUCAACGCGguGCcgcGCAGcgCg -3'
miRNA:   3'- gcUCGC---AGUUGCGCguCGa--CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 22902 0.7 0.567951
Target:  5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3'
miRNA:   3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 25834 0.7 0.556706
Target:  5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3'
miRNA:   3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 20957 0.69 0.613401
Target:  5'- aCGGGcCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- -GCUC-GCa---GU---UGCGCGUCGa---CGUUUAg -5'
17004 5' -52.6 NC_004333.2 + 40717 0.69 0.601987
Target:  5'- gCGAuCGUCAcCG-GCGGCgGCAAGUCg -3'
miRNA:   3'- -GCUcGCAGUuGCgCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46674 0.66 0.780227
Target:  5'- cCGAcucGcCGUCGcuCGCGCAGUUcgaGCAAAUCu -3'
miRNA:   3'- -GCU---C-GCAGUu-GCGCGUCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 28679 0.73 0.409266
Target:  5'- aCGAGCGccgcCAGCGCGCcAGC-GCcGAUCg -3'
miRNA:   3'- -GCUCGCa---GUUGCGCG-UCGaCGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 39011 0.72 0.449048
Target:  5'- aCGAaCGcaAGCGCGCAGCUGC-GGUCg -3'
miRNA:   3'- -GCUcGCagUUGCGCGUCGACGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 37190 0.71 0.490874
Target:  5'- -aAGCGgcUUAACGUGCAGCgGCAGGUUc -3'
miRNA:   3'- gcUCGC--AGUUGCGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 16807 0.71 0.490874
Target:  5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3'
miRNA:   3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 46142 0.71 0.500536
Target:  5'- gCGGGCGUCGACGUgaucgauGCGGCcGUGAcGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCG-------CGUCGaCGUU-UAG- -5'
17004 5' -52.6 NC_004333.2 + 8842 0.67 0.715573
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 43382 0.67 0.71446
Target:  5'- uGAGCGUCAcGCGaCGCGGgcucaccCUGCcgaaGGAUCg -3'
miRNA:   3'- gCUCGCAGU-UGC-GCGUC-------GACG----UUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.