miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 11884 0.7 0.531103
Target:  5'- uCGGGCGgcgcguaucgCAugGCGCAggacgucgcgugucGCUGCAuGUCg -3'
miRNA:   3'- -GCUCGCa---------GUugCGCGU--------------CGACGUuUAG- -5'
17004 5' -52.6 NC_004333.2 + 16487 0.66 0.814393
Target:  5'- uCGAGCGUCGACGgucuauccaacacgGCGGaUGCGAAg- -3'
miRNA:   3'- -GCUCGCAGUUGCg-------------CGUCgACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 16807 0.71 0.490874
Target:  5'- uGAGaCGa-AACGCGCGGCUGC--GUCg -3'
miRNA:   3'- gCUC-GCagUUGCGCGUCGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 16879 0.7 0.556706
Target:  5'- -cGGCGUCGGCGCaGguGCgGCcGGUCu -3'
miRNA:   3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 18549 0.73 0.371754
Target:  5'- cCGGGUGcggCAGCcgGCGCGGCgGCGAAUCc -3'
miRNA:   3'- -GCUCGCa--GUUG--CGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 19296 0.66 0.790496
Target:  5'- cCGAGCG-CGAuCGCGCGGCacgaGCGc--- -3'
miRNA:   3'- -GCUCGCaGUU-GCGCGUCGa---CGUuuag -5'
17004 5' -52.6 NC_004333.2 + 20642 0.67 0.726646
Target:  5'- gCGAGCGUCGcaACgGCGCuGCgccagugGCAGGa- -3'
miRNA:   3'- -GCUCGCAGU--UG-CGCGuCGa------CGUUUag -5'
17004 5' -52.6 NC_004333.2 + 20933 0.66 0.790496
Target:  5'- aCGAGgCGUCGGCGCagGCAGaC-GCucGAUCa -3'
miRNA:   3'- -GCUC-GCAGUUGCG--CGUC-GaCGu-UUAG- -5'
17004 5' -52.6 NC_004333.2 + 20957 0.69 0.613401
Target:  5'- aCGGGcCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- -GCUC-GCa---GU---UGCGCGUCGa---CGUUUAg -5'
17004 5' -52.6 NC_004333.2 + 21335 0.7 0.553345
Target:  5'- cCGAGCG-CGACGCGaCAgcacucgcuacgacGCUGCAGGc- -3'
miRNA:   3'- -GCUCGCaGUUGCGC-GU--------------CGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 22006 0.67 0.726646
Target:  5'- uCGGcGCGaaUCAGCGCGCGgGCguuuucucgacGCAGAUCa -3'
miRNA:   3'- -GCU-CGC--AGUUGCGCGU-CGa----------CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 22902 0.7 0.567951
Target:  5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3'
miRNA:   3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 22973 0.69 0.624833
Target:  5'- gCGGGCGUCGACGUcgagucGC-GCaGCGAGUUc -3'
miRNA:   3'- -GCUCGCAGUUGCG------CGuCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 24653 0.67 0.724439
Target:  5'- -cGGCGgcuacccgaaaGGCGCGguGCUGCAAAg- -3'
miRNA:   3'- gcUCGCag---------UUGCGCguCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 25271 0.69 0.613401
Target:  5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3'
miRNA:   3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 25407 0.69 0.636271
Target:  5'- gCGAGCGcgccugCAGCGUGCcGGCgGCGGccGUCa -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCG-UCGaCGUU--UAG- -5'
17004 5' -52.6 NC_004333.2 + 25520 0.67 0.726646
Target:  5'- cCGAgcGCGUCuugguACGCGCcGCUcgaggucaGCGGGUCg -3'
miRNA:   3'- -GCU--CGCAGu----UGCGCGuCGA--------CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 25834 0.7 0.556706
Target:  5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3'
miRNA:   3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 26657 0.72 0.4389
Target:  5'- uGAGCGUgAuCGCGcCGGCUGCcGAUa -3'
miRNA:   3'- gCUCGCAgUuGCGC-GUCGACGuUUAg -5'
17004 5' -52.6 NC_004333.2 + 27356 0.68 0.704411
Target:  5'- uGGGUGUCAugGUGCGGUaGCc---- -3'
miRNA:   3'- gCUCGCAGUugCGCGUCGaCGuuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.