miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 763 0.66 0.810488
Target:  5'- gCGAGCG---GCGaUGUAGCUGCGAu-- -3'
miRNA:   3'- -GCUCGCaguUGC-GCGUCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 1958 0.67 0.748474
Target:  5'- gCGGGCcgccuuGUCGAuuUGCuGCAGUUGCGAGUUc -3'
miRNA:   3'- -GCUCG------CAGUU--GCG-CGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2268 0.76 0.273897
Target:  5'- uCGAGCG-CAGCGCGUuuGCcgucgGCAAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGCGu-CGa----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2346 0.68 0.693172
Target:  5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3'
miRNA:   3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2931 0.69 0.5906
Target:  5'- uGAcCGUCAACGUGCcGCUGUAGc-- -3'
miRNA:   3'- gCUcGCAGUUGCGCGuCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 2977 0.71 0.512456
Target:  5'- cCGGGCuUCGugGCGCGgacagcugccGCUGCGcAUCa -3'
miRNA:   3'- -GCUCGcAGUugCGCGU----------CGACGUuUAG- -5'
17004 5' -52.6 NC_004333.2 + 3172 0.73 0.409266
Target:  5'- uCGAGCGgccggaCAGCGCGCcGUgGUAGAUCg -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCGuCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 3540 0.66 0.810488
Target:  5'- -aAGCGggaUCAACGCGguGCcgcGCAGcgCg -3'
miRNA:   3'- gcUCGC---AGUUGCGCguCGa--CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 3688 0.8 0.149122
Target:  5'- uGAGcCGUC-GCGuCGUAGCUGCGGAUCg -3'
miRNA:   3'- gCUC-GCAGuUGC-GCGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 4465 0.66 0.790496
Target:  5'- gCGAcGCGUCAGgugccaaccCGCGCAGUguuUGCAc--- -3'
miRNA:   3'- -GCU-CGCAGUU---------GCGCGUCG---ACGUuuag -5'
17004 5' -52.6 NC_004333.2 + 4766 0.79 0.162452
Target:  5'- cCGAGCGUCugccuGCGCggGCGGCUGCGGGa- -3'
miRNA:   3'- -GCUCGCAGu----UGCG--CGUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 6045 0.66 0.790496
Target:  5'- uGAGCGUCAuguCGUGCAcCgGCAAc-- -3'
miRNA:   3'- gCUCGCAGUu--GCGCGUcGaCGUUuag -5'
17004 5' -52.6 NC_004333.2 + 7081 0.68 0.670517
Target:  5'- uGA-CGUCu-CGCGCAGUUGCGuacauAUCg -3'
miRNA:   3'- gCUcGCAGuuGCGCGUCGACGUu----UAG- -5'
17004 5' -52.6 NC_004333.2 + 8842 0.67 0.715573
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 8915 0.67 0.737617
Target:  5'- -uGGCGUCGAUGCGCGacGCgGCu--UCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGU--CGaCGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 9095 0.69 0.601987
Target:  5'- aCGAGUGcCGACGCaCGGCgcaCGAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGcGUCGac-GUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 9352 0.66 0.800587
Target:  5'- --cGuCGUCGGCGCGCGGCgucggGCcu-UCu -3'
miRNA:   3'- gcuC-GCAGUUGCGCGUCGa----CGuuuAG- -5'
17004 5' -52.6 NC_004333.2 + 9569 0.68 0.704411
Target:  5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3'
miRNA:   3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 9930 0.68 0.681871
Target:  5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3'
miRNA:   3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5'
17004 5' -52.6 NC_004333.2 + 10213 0.69 0.613401
Target:  5'- gCGGcCGUCGgcaucaaagcuGCGCGCGGuCUGCuuGUCg -3'
miRNA:   3'- -GCUcGCAGU-----------UGCGCGUC-GACGuuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.