miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 46925 0.72 0.469723
Target:  5'- gCGAGCGcCGcgaagccucGCGCGCAGCcaagGCGGcgCg -3'
miRNA:   3'- -GCUCGCaGU---------UGCGCGUCGa---CGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 46674 0.66 0.780227
Target:  5'- cCGAcucGcCGUCGcuCGCGCAGUUcgaGCAAAUCu -3'
miRNA:   3'- -GCU---C-GCAGUu-GCGCGUCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46344 0.74 0.345199
Target:  5'- gCGGGCGcCGuuAUGCGCcGCUGCGGAUUu -3'
miRNA:   3'- -GCUCGCaGU--UGCGCGuCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 46142 0.71 0.500536
Target:  5'- gCGGGCGUCGACGUgaucgauGCGGCcGUGAcGUCg -3'
miRNA:   3'- -GCUCGCAGUUGCG-------CGUCGaCGUU-UAG- -5'
17004 5' -52.6 NC_004333.2 + 46112 0.68 0.693172
Target:  5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3'
miRNA:   3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 45219 0.9 0.032527
Target:  5'- aCGGGCGUCAcgcuCGCGCAGCUGCAGGg- -3'
miRNA:   3'- -GCUCGCAGUu---GCGCGUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 45123 0.66 0.769791
Target:  5'- cCGGGCaucGUCAACgGCGgcCAGCUGCcguacGAUCu -3'
miRNA:   3'- -GCUCG---CAGUUG-CGC--GUCGACGu----UUAG- -5'
17004 5' -52.6 NC_004333.2 + 43961 1.09 0.001386
Target:  5'- uCGAGCGUCAACGCGCAGCUGCAAAUCc -3'
miRNA:   3'- -GCUCGCAGUUGCGCGUCGACGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 43382 0.67 0.71446
Target:  5'- uGAGCGUCAcGCGaCGCGGgcucaccCUGCcgaaGGAUCg -3'
miRNA:   3'- gCUCGCAGU-UGC-GCGUC-------GACG----UUUAG- -5'
17004 5' -52.6 NC_004333.2 + 42309 0.67 0.748474
Target:  5'- cCGAgGCGUaucGCGUGCuGUUGCAGcgCg -3'
miRNA:   3'- -GCU-CGCAgu-UGCGCGuCGACGUUuaG- -5'
17004 5' -52.6 NC_004333.2 + 40717 0.69 0.601987
Target:  5'- gCGAuCGUCAcCG-GCGGCgGCAAGUCg -3'
miRNA:   3'- -GCUcGCAGUuGCgCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 39257 0.67 0.748474
Target:  5'- cCGAGCGgccggCAggcgcACGCGCGcGCgaucGCAGGUUg -3'
miRNA:   3'- -GCUCGCa----GU-----UGCGCGU-CGa---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 39129 0.67 0.759203
Target:  5'- -cGGCGUCGACGUGUc---GCAGGUCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGucgaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 39011 0.72 0.449048
Target:  5'- aCGAaCGcaAGCGCGCAGCUGC-GGUCg -3'
miRNA:   3'- -GCUcGCagUUGCGCGUCGACGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 37190 0.71 0.490874
Target:  5'- -aAGCGgcUUAACGUGCAGCgGCAGGUUc -3'
miRNA:   3'- gcUCGC--AGUUGCGCGUCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 36325 0.68 0.670517
Target:  5'- cCGGGCGUCGcauCGCcuaCGGUUGCAAGa- -3'
miRNA:   3'- -GCUCGCAGUu--GCGc--GUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 32820 0.7 0.556706
Target:  5'- -cGGCGuUCAGCGCGCGcGuCUGCGccgaGAUCg -3'
miRNA:   3'- gcUCGC-AGUUGCGCGU-C-GACGU----UUAG- -5'
17004 5' -52.6 NC_004333.2 + 32307 0.71 0.505939
Target:  5'- aCGuGCGUCAgcaggucggucacgaGCGCGUgcacGGCUGcCGGGUCg -3'
miRNA:   3'- -GCuCGCAGU---------------UGCGCG----UCGAC-GUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 32095 0.68 0.659125
Target:  5'- -cGGCGUCGGCGCGUucAGUgacgGCAGuUCc -3'
miRNA:   3'- gcUCGCAGUUGCGCG--UCGa---CGUUuAG- -5'
17004 5' -52.6 NC_004333.2 + 31831 0.68 0.704411
Target:  5'- gCGAGa-UCAGCGUGUagAGCUGCAGc-- -3'
miRNA:   3'- -GCUCgcAGUUGCGCG--UCGACGUUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.