Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17004 | 5' | -52.6 | NC_004333.2 | + | 16879 | 0.7 | 0.556706 |
Target: 5'- -cGGCGUCGGCGCaGguGCgGCcGGUCu -3' miRNA: 3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 25834 | 0.7 | 0.556706 |
Target: 5'- gGAGgGUCAgggGCGCGUcaGGCggucgaUGCGAAUCu -3' miRNA: 3'- gCUCgCAGU---UGCGCG--UCG------ACGUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 22902 | 0.7 | 0.567951 |
Target: 5'- aCGAGCagaAGCGCGguGCUGCcgcUCg -3' miRNA: 3'- -GCUCGcagUUGCGCguCGACGuuuAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 2931 | 0.69 | 0.5906 |
Target: 5'- uGAcCGUCAACGUGCcGCUGUAGc-- -3' miRNA: 3'- gCUcGCAGUUGCGCGuCGACGUUuag -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 40717 | 0.69 | 0.601987 |
Target: 5'- gCGAuCGUCAcCG-GCGGCgGCAAGUCg -3' miRNA: 3'- -GCUcGCAGUuGCgCGUCGaCGUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 9095 | 0.69 | 0.601987 |
Target: 5'- aCGAGUGcCGACGCaCGGCgcaCGAGUCg -3' miRNA: 3'- -GCUCGCaGUUGCGcGUCGac-GUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 25271 | 0.69 | 0.613401 |
Target: 5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3' miRNA: 3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 20957 | 0.69 | 0.613401 |
Target: 5'- aCGGGcCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3' miRNA: 3'- -GCUC-GCa---GU---UGCGCGUCGa---CGUUUAg -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 10213 | 0.69 | 0.613401 |
Target: 5'- gCGGcCGUCGgcaucaaagcuGCGCGCGGuCUGCuuGUCg -3' miRNA: 3'- -GCUcGCAGU-----------UGCGCGUC-GACGuuUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 22973 | 0.69 | 0.624833 |
Target: 5'- gCGGGCGUCGACGUcgagucGC-GCaGCGAGUUc -3' miRNA: 3'- -GCUCGCAGUUGCG------CGuCGaCGUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 25407 | 0.69 | 0.636271 |
Target: 5'- gCGAGCGcgccugCAGCGUGCcGGCgGCGGccGUCa -3' miRNA: 3'- -GCUCGCa-----GUUGCGCG-UCGaCGUU--UAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 32095 | 0.68 | 0.659125 |
Target: 5'- -cGGCGUCGGCGCGUucAGUgacgGCAGuUCc -3' miRNA: 3'- gcUCGCAGUUGCGCG--UCGa---CGUUuAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 36325 | 0.68 | 0.670517 |
Target: 5'- cCGGGCGUCGcauCGCcuaCGGUUGCAAGa- -3' miRNA: 3'- -GCUCGCAGUu--GCGc--GUCGACGUUUag -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 7081 | 0.68 | 0.670517 |
Target: 5'- uGA-CGUCu-CGCGCAGUUGCGuacauAUCg -3' miRNA: 3'- gCUcGCAGuuGCGCGUCGACGUu----UAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 9930 | 0.68 | 0.681871 |
Target: 5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3' miRNA: 3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 31171 | 0.68 | 0.693172 |
Target: 5'- uCGAGCGcggCGACgGCGUAuGCcGCGAGUUg -3' miRNA: 3'- -GCUCGCa--GUUG-CGCGU-CGaCGUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 2346 | 0.68 | 0.693172 |
Target: 5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3' miRNA: 3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 46112 | 0.68 | 0.693172 |
Target: 5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3' miRNA: 3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 9569 | 0.68 | 0.704411 |
Target: 5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3' miRNA: 3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5' |
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17004 | 5' | -52.6 | NC_004333.2 | + | 31831 | 0.68 | 0.704411 |
Target: 5'- gCGAGa-UCAGCGUGUagAGCUGCAGc-- -3' miRNA: 3'- -GCUCgcAGUUGCGCG--UCGACGUUuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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