miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 27664 0.67 0.726646
Target:  5'- gCGAGCGgcgCGGCG-GCGGCcgGCAGc-- -3'
miRNA:   3'- -GCUCGCa--GUUGCgCGUCGa-CGUUuag -5'
17004 5' -52.6 NC_004333.2 + 29006 0.67 0.726646
Target:  5'- gCGuGCG-CAucGCGCGCGGCUaGCAc--- -3'
miRNA:   3'- -GCuCGCaGU--UGCGCGUCGA-CGUuuag -5'
17004 5' -52.6 NC_004333.2 + 24653 0.67 0.724439
Target:  5'- -cGGCGgcuacccgaaaGGCGCGguGCUGCAAAg- -3'
miRNA:   3'- gcUCGCag---------UUGCGCguCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 8842 0.67 0.715573
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 43382 0.67 0.71446
Target:  5'- uGAGCGUCAcGCGaCGCGGgcucaccCUGCcgaaGGAUCg -3'
miRNA:   3'- gCUCGCAGU-UGC-GCGUC-------GACG----UUUAG- -5'
17004 5' -52.6 NC_004333.2 + 31831 0.68 0.704411
Target:  5'- gCGAGa-UCAGCGUGUagAGCUGCAGc-- -3'
miRNA:   3'- -GCUCgcAGUUGCGCG--UCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 27356 0.68 0.704411
Target:  5'- uGGGUGUCAugGUGCGGUaGCc---- -3'
miRNA:   3'- gCUCGCAGUugCGCGUCGaCGuuuag -5'
17004 5' -52.6 NC_004333.2 + 9569 0.68 0.704411
Target:  5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3'
miRNA:   3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 46112 0.68 0.693172
Target:  5'- cCGAGCG-CggUGCGC-GCUacgGCAAGUUc -3'
miRNA:   3'- -GCUCGCaGuuGCGCGuCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 31171 0.68 0.693172
Target:  5'- uCGAGCGcggCGACgGCGUAuGCcGCGAGUUg -3'
miRNA:   3'- -GCUCGCa--GUUG-CGCGU-CGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 2346 0.68 0.693172
Target:  5'- cCGuGCGgccguUGCGCAGCUGgAAGUUg -3'
miRNA:   3'- -GCuCGCaguu-GCGCGUCGACgUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 9930 0.68 0.681871
Target:  5'- aCGAGCagGUCGcCGCGCAGgUGUuugccGUCg -3'
miRNA:   3'- -GCUCG--CAGUuGCGCGUCgACGuu---UAG- -5'
17004 5' -52.6 NC_004333.2 + 36325 0.68 0.670517
Target:  5'- cCGGGCGUCGcauCGCcuaCGGUUGCAAGa- -3'
miRNA:   3'- -GCUCGCAGUu--GCGc--GUCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 7081 0.68 0.670517
Target:  5'- uGA-CGUCu-CGCGCAGUUGCGuacauAUCg -3'
miRNA:   3'- gCUcGCAGuuGCGCGUCGACGUu----UAG- -5'
17004 5' -52.6 NC_004333.2 + 32095 0.68 0.659125
Target:  5'- -cGGCGUCGGCGCGUucAGUgacgGCAGuUCc -3'
miRNA:   3'- gcUCGCAGUUGCGCG--UCGa---CGUUuAG- -5'
17004 5' -52.6 NC_004333.2 + 25407 0.69 0.636271
Target:  5'- gCGAGCGcgccugCAGCGUGCcGGCgGCGGccGUCa -3'
miRNA:   3'- -GCUCGCa-----GUUGCGCG-UCGaCGUU--UAG- -5'
17004 5' -52.6 NC_004333.2 + 22973 0.69 0.624833
Target:  5'- gCGGGCGUCGACGUcgagucGC-GCaGCGAGUUc -3'
miRNA:   3'- -GCUCGCAGUUGCG------CGuCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 10213 0.69 0.613401
Target:  5'- gCGGcCGUCGgcaucaaagcuGCGCGCGGuCUGCuuGUCg -3'
miRNA:   3'- -GCUcGCAGU-----------UGCGCGUC-GACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 25271 0.69 0.613401
Target:  5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3'
miRNA:   3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 20957 0.69 0.613401
Target:  5'- aCGGGcCGgacgCAaacGCGCGCGGCgcggGCGAGUg -3'
miRNA:   3'- -GCUC-GCa---GU---UGCGCGUCGa---CGUUUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.