miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17004 5' -52.6 NC_004333.2 + 16879 0.7 0.556706
Target:  5'- -cGGCGUCGGCGCaGguGCgGCcGGUCu -3'
miRNA:   3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5'
17004 5' -52.6 NC_004333.2 + 24653 0.67 0.724439
Target:  5'- -cGGCGgcuacccgaaaGGCGCGguGCUGCAAAg- -3'
miRNA:   3'- gcUCGCag---------UUGCGCguCGACGUUUag -5'
17004 5' -52.6 NC_004333.2 + 8842 0.67 0.715573
Target:  5'- gCGGuGCGUCGuagaaGCGCGCcGCcgccgaGCGAAUCg -3'
miRNA:   3'- -GCU-CGCAGU-----UGCGCGuCGa-----CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 43382 0.67 0.71446
Target:  5'- uGAGCGUCAcGCGaCGCGGgcucaccCUGCcgaaGGAUCg -3'
miRNA:   3'- gCUCGCAGU-UGC-GCGUC-------GACG----UUUAG- -5'
17004 5' -52.6 NC_004333.2 + 9569 0.68 0.704411
Target:  5'- aCGGGCaG-CGGCGCGCccGGCUGUAGc-- -3'
miRNA:   3'- -GCUCG-CaGUUGCGCG--UCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 31171 0.68 0.693172
Target:  5'- uCGAGCGcggCGACgGCGUAuGCcGCGAGUUg -3'
miRNA:   3'- -GCUCGCa--GUUG-CGCGU-CGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 22973 0.69 0.624833
Target:  5'- gCGGGCGUCGACGUcgagucGC-GCaGCGAGUUc -3'
miRNA:   3'- -GCUCGCAGUUGCG------CGuCGaCGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 25271 0.69 0.613401
Target:  5'- uCGAGCGgcagCAcCGCGCuuCUGCucGUCa -3'
miRNA:   3'- -GCUCGCa---GUuGCGCGucGACGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 9095 0.69 0.601987
Target:  5'- aCGAGUGcCGACGCaCGGCgcaCGAGUCg -3'
miRNA:   3'- -GCUCGCaGUUGCGcGUCGac-GUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 27664 0.67 0.726646
Target:  5'- gCGAGCGgcgCGGCG-GCGGCcgGCAGc-- -3'
miRNA:   3'- -GCUCGCa--GUUGCgCGUCGa-CGUUuag -5'
17004 5' -52.6 NC_004333.2 + 27403 0.67 0.741975
Target:  5'- gGAGCGcaggcgugucgacguUCAgGCGCGCAGCcGC--GUCg -3'
miRNA:   3'- gCUCGC---------------AGU-UGCGCGUCGaCGuuUAG- -5'
17004 5' -52.6 NC_004333.2 + 28205 0.67 0.748474
Target:  5'- uGAGgcCGaCAGCGCGCAGUcggGCAAAg- -3'
miRNA:   3'- gCUC--GCaGUUGCGCGUCGa--CGUUUag -5'
17004 5' -52.6 NC_004333.2 + 763 0.66 0.810488
Target:  5'- gCGAGCG---GCGaUGUAGCUGCGAu-- -3'
miRNA:   3'- -GCUCGCaguUGC-GCGUCGACGUUuag -5'
17004 5' -52.6 NC_004333.2 + 20933 0.66 0.790496
Target:  5'- aCGAGgCGUCGGCGCagGCAGaC-GCucGAUCa -3'
miRNA:   3'- -GCUC-GCAGUUGCG--CGUC-GaCGu-UUAG- -5'
17004 5' -52.6 NC_004333.2 + 19296 0.66 0.790496
Target:  5'- cCGAGCG-CGAuCGCGCGGCacgaGCGc--- -3'
miRNA:   3'- -GCUCGCaGUU-GCGCGUCGa---CGUuuag -5'
17004 5' -52.6 NC_004333.2 + 4465 0.66 0.790496
Target:  5'- gCGAcGCGUCAGgugccaaccCGCGCAGUguuUGCAc--- -3'
miRNA:   3'- -GCU-CGCAGUU---------GCGCGUCG---ACGUuuag -5'
17004 5' -52.6 NC_004333.2 + 6045 0.66 0.790496
Target:  5'- uGAGCGUCAuguCGUGCAcCgGCAAc-- -3'
miRNA:   3'- gCUCGCAGUu--GCGCGUcGaCGUUuag -5'
17004 5' -52.6 NC_004333.2 + 46674 0.66 0.780227
Target:  5'- cCGAcucGcCGUCGcuCGCGCAGUUcgaGCAAAUCu -3'
miRNA:   3'- -GCU---C-GCAGUu-GCGCGUCGA---CGUUUAG- -5'
17004 5' -52.6 NC_004333.2 + 45123 0.66 0.769791
Target:  5'- cCGGGCaucGUCAACgGCGgcCAGCUGCcguacGAUCu -3'
miRNA:   3'- -GCUCG---CAGUUG-CGC--GUCGACGu----UUAG- -5'
17004 5' -52.6 NC_004333.2 + 39129 0.67 0.759203
Target:  5'- -cGGCGUCGACGUGUc---GCAGGUCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGucgaCGUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.