miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 3' -54.1 NC_004333.2 + 39863 0.66 0.726763
Target:  5'- aACGCAua-GCGGGGCGcgagCccCGCGCGc -3'
miRNA:   3'- -UGCGUuagCGUCCCGUa---GuaGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 20692 0.66 0.726763
Target:  5'- cACGCAauggAUCGCGGcGGUcguUCAgcaCACGCu -3'
miRNA:   3'- -UGCGU----UAGCGUC-CCGu--AGUa--GUGCGu -5'
17010 3' -54.1 NC_004333.2 + 47715 0.66 0.726763
Target:  5'- cACGC--UCGCc-GGCA-CGUCGCGCGc -3'
miRNA:   3'- -UGCGuuAGCGucCCGUaGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 38577 0.66 0.726763
Target:  5'- cUGCuguUCGC-GGGCAUCGUgaaGCGCc -3'
miRNA:   3'- uGCGuu-AGCGuCCCGUAGUAg--UGCGu -5'
17010 3' -54.1 NC_004333.2 + 6072 0.66 0.715788
Target:  5'- gGCGCAccUCGCGacacGCcUCGUCGCGCAg -3'
miRNA:   3'- -UGCGUu-AGCGUcc--CGuAGUAGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 5269 0.66 0.715788
Target:  5'- gAUGCGAUaCG-GGGGCGugcUCAUCAgGCGu -3'
miRNA:   3'- -UGCGUUA-GCgUCCCGU---AGUAGUgCGU- -5'
17010 3' -54.1 NC_004333.2 + 4639 0.66 0.715788
Target:  5'- aGCGCcAUCGCGaucauggcgacGGGCAggcCggCGCGCGg -3'
miRNA:   3'- -UGCGuUAGCGU-----------CCCGUa--GuaGUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 27729 0.66 0.704725
Target:  5'- uGCGCGAUCGCGGcGCGa-AUCugGUc -3'
miRNA:   3'- -UGCGUUAGCGUCcCGUagUAGugCGu -5'
17010 3' -54.1 NC_004333.2 + 5326 0.66 0.704725
Target:  5'- cGCGCcuUCGCGcuGgAUCGUCACGCc -3'
miRNA:   3'- -UGCGuuAGCGUccCgUAGUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 19299 0.66 0.704725
Target:  5'- aGCGCGAUCGCGcGGCAcga--GCGCu -3'
miRNA:   3'- -UGCGUUAGCGUcCCGUaguagUGCGu -5'
17010 3' -54.1 NC_004333.2 + 13132 0.66 0.704725
Target:  5'- -gGCAAccCGCAGGaCAgcgCGUCACGCc -3'
miRNA:   3'- ugCGUUa-GCGUCCcGUa--GUAGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 32077 0.66 0.693587
Target:  5'- cGCGaCGAUCGCAuagaucGGCGUCggCGCGUu -3'
miRNA:   3'- -UGC-GUUAGCGUc-----CCGUAGuaGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 18903 0.66 0.682386
Target:  5'- gACGCGAUCaaaGCGgcucGGGCcgCGUaggaGCGCAg -3'
miRNA:   3'- -UGCGUUAG---CGU----CCCGuaGUAg---UGCGU- -5'
17010 3' -54.1 NC_004333.2 + 27292 0.66 0.682386
Target:  5'- cGCGCug-CGCcGGGC-UCGUCGcCGCc -3'
miRNA:   3'- -UGCGuuaGCGuCCCGuAGUAGU-GCGu -5'
17010 3' -54.1 NC_004333.2 + 40176 0.66 0.682386
Target:  5'- gACGCuGGUCGC--GGCGUuCAUCAcCGCAg -3'
miRNA:   3'- -UGCG-UUAGCGucCCGUA-GUAGU-GCGU- -5'
17010 3' -54.1 NC_004333.2 + 27245 0.67 0.666622
Target:  5'- gGCGUAGcCGCcGGGCGUCGgguugcaauccugCGCGCc -3'
miRNA:   3'- -UGCGUUaGCGuCCCGUAGUa------------GUGCGu -5'
17010 3' -54.1 NC_004333.2 + 37054 0.67 0.659843
Target:  5'- aGCGCGAUCGCgcacaugacggaGGGGUuugCGcggauUCGCGCu -3'
miRNA:   3'- -UGCGUUAGCG------------UCCCGua-GU-----AGUGCGu -5'
17010 3' -54.1 NC_004333.2 + 16357 0.67 0.653055
Target:  5'- cACGCugaucucgcCGCAGGGCAUCuaccucgauuucacgAUCggGCGCAu -3'
miRNA:   3'- -UGCGuua------GCGUCCCGUAG---------------UAG--UGCGU- -5'
17010 3' -54.1 NC_004333.2 + 10200 0.67 0.648525
Target:  5'- cGCGCAcgCGCAugcggccgucGGCAUCAaagcugCGCGCGg -3'
miRNA:   3'- -UGCGUuaGCGUc---------CCGUAGUa-----GUGCGU- -5'
17010 3' -54.1 NC_004333.2 + 20557 0.67 0.648525
Target:  5'- cGCGCcgcuGAUCGUcGGcGCGUCGggUCGCGCc -3'
miRNA:   3'- -UGCG----UUAGCGuCC-CGUAGU--AGUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.