miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 5' -52.8 NC_004333.2 + 32972 0.66 0.821066
Target:  5'- uGACcgGCCUGC--UGCCGGcCGUGCg -3'
miRNA:   3'- gUUGa-UGGGCGuuGCGGUCaGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 13011 0.66 0.821066
Target:  5'- gCAACUGCCgGCGAUGgCGGUgCGa--- -3'
miRNA:   3'- -GUUGAUGGgCGUUGCgGUCA-GCauga -5'
17011 5' -52.8 NC_004333.2 + 37996 0.66 0.821066
Target:  5'- -cACUGCCCGCGuCGCuCGGcuuccaGUGCg -3'
miRNA:   3'- guUGAUGGGCGUuGCG-GUCag----CAUGa -5'
17011 5' -52.8 NC_004333.2 + 26816 0.66 0.821066
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
17011 5' -52.8 NC_004333.2 + 2270 0.66 0.811478
Target:  5'- cCAGCUcggcaagcACCUcgaGCAGCGCCucGUCGUAg- -3'
miRNA:   3'- -GUUGA--------UGGG---CGUUGCGGu-CAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 467 0.66 0.810508
Target:  5'- gCGACgUGCCgGCGagcgugaACGCUucGUCGUACUu -3'
miRNA:   3'- -GUUG-AUGGgCGU-------UGCGGu-CAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 37926 0.66 0.801692
Target:  5'- aAACUGCCUGCGuCGUgGGaaGUGCa -3'
miRNA:   3'- gUUGAUGGGCGUuGCGgUCagCAUGa -5'
17011 5' -52.8 NC_004333.2 + 781 0.66 0.791717
Target:  5'- gCGAUUGCuuGC-GCGUCGGUCGgcGCUu -3'
miRNA:   3'- -GUUGAUGggCGuUGCGGUCAGCa-UGA- -5'
17011 5' -52.8 NC_004333.2 + 47482 0.66 0.790709
Target:  5'- gCGACUGCCgCGCugaacgaGGCGCCGGcCG-GCg -3'
miRNA:   3'- -GUUGAUGG-GCG-------UUGCGGUCaGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 9545 0.66 0.781566
Target:  5'- gAGCUGCUucaaUGCGGCGCCGaUCGUGg- -3'
miRNA:   3'- gUUGAUGG----GCGUUGCGGUcAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 34003 0.66 0.781566
Target:  5'- cCGACgagcgACCCgGCAucGgGCCGGUCGUcaACg -3'
miRNA:   3'- -GUUGa----UGGG-CGU--UgCGGUCAGCA--UGa -5'
17011 5' -52.8 NC_004333.2 + 19452 0.66 0.781566
Target:  5'- uGGCcgACCUGCGuuucuacggcAUGCCggaAGUCGUGCUg -3'
miRNA:   3'- gUUGa-UGGGCGU----------UGCGG---UCAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 36531 0.67 0.77125
Target:  5'- gCGACUACUgGCAGCGCUAcuUCG-ACa -3'
miRNA:   3'- -GUUGAUGGgCGUUGCGGUc-AGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 18316 0.67 0.77021
Target:  5'- aCGACUACCgCGCGcgcuucgcugcgaACGaUCAGUCG-ACUg -3'
miRNA:   3'- -GUUGAUGG-GCGU-------------UGC-GGUCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 6738 0.67 0.769168
Target:  5'- cCGACUcGCCCGCGucgagcaGCGCCuGUucgaucaugugcgCGUGCUc -3'
miRNA:   3'- -GUUGA-UGGGCGU-------UGCGGuCA-------------GCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 36078 0.67 0.750175
Target:  5'- gAGCUgGCCCGUGacgcggcgcugcGCGCCAGccaCGUACg -3'
miRNA:   3'- gUUGA-UGGGCGU------------UGCGGUCa--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 25419 0.67 0.739441
Target:  5'- gCAGCgUGCCgGCGgcggccgucACGCCGGgCGUGCc -3'
miRNA:   3'- -GUUG-AUGGgCGU---------UGCGGUCaGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 15795 0.67 0.739441
Target:  5'- cCGAgaACCCcgacGCGGCGCUgaacGUCGUGCUg -3'
miRNA:   3'- -GUUgaUGGG----CGUUGCGGu---CAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 31326 0.68 0.706599
Target:  5'- aCGGC-GCCCGCAAUGCCGG-CcaGCUu -3'
miRNA:   3'- -GUUGaUGGGCGUUGCGGUCaGcaUGA- -5'
17011 5' -52.8 NC_004333.2 + 42666 0.68 0.706599
Target:  5'- gAGCaGCCCGCAacaGCGCCGaUCGU-CUc -3'
miRNA:   3'- gUUGaUGGGCGU---UGCGGUcAGCAuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.