miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 47815 0.67 0.741237
Target:  5'- gGCC-UGCAGCuGUUCAAAGCGccgacgggcaUUUCGg -3'
miRNA:   3'- aCGGcGCGUCG-CAAGUUUUGC----------AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 47756 0.7 0.611687
Target:  5'- cUGCCGCGCAGCcuGUcuugaUCAAGgaucgcgcgcucuacGCG-CUCGg -3'
miRNA:   3'- -ACGGCGCGUCG--CA-----AGUUU---------------UGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 47189 0.68 0.69737
Target:  5'- cUGCCGCGCAGCa--CGAGGCacaaGUCgccgCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaaGUUUUG----CAGa---GC- -5'
17013 5' -52.6 NC_004333.2 + 45677 0.69 0.617342
Target:  5'- cGUCGCGCccgaucucgaggcAGCG-UCGAu-CGUCUCGa -3'
miRNA:   3'- aCGGCGCG-------------UCGCaAGUUuuGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 45275 0.73 0.434051
Target:  5'- cGCUGCGCAGC-------ACGUCUCGg -3'
miRNA:   3'- aCGGCGCGUCGcaaguuuUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 45071 0.68 0.694027
Target:  5'- gGCCGCGCccgggcaagaaaacGGCGgacugCGAGGCGauaCUCGa -3'
miRNA:   3'- aCGGCGCG--------------UCGCaa---GUUUUGCa--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 44949 0.66 0.813041
Target:  5'- aUGCUGCcCGGCGUcaUCGGGGCGgg-CGg -3'
miRNA:   3'- -ACGGCGcGUCGCA--AGUUUUGCagaGC- -5'
17013 5' -52.6 NC_004333.2 + 44895 0.68 0.731502
Target:  5'- cGCUGCGcCAGCugaugagcuGCGUCUCGa -3'
miRNA:   3'- aCGGCGC-GUCGcaaguuu--UGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44417 0.68 0.728237
Target:  5'- cUGCCGgGCucgcuggcugguGCGUgCGAGGCG-CUCGg -3'
miRNA:   3'- -ACGGCgCGu-----------CGCAaGUUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44315 0.67 0.759362
Target:  5'- cGCUGCGCccguccgaagaugaAGUGUUCGAcACG-CUCu -3'
miRNA:   3'- aCGGCGCG--------------UCGCAAGUUuUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 43070 0.71 0.540129
Target:  5'- gUGCUGCGCgAGCuGUUCAAcAUG-CUCGu -3'
miRNA:   3'- -ACGGCGCG-UCG-CAAGUUuUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 42091 0.68 0.686206
Target:  5'- cGUCGUGCuGCGcgaCGAGGCGUgUCGc -3'
miRNA:   3'- aCGGCGCGuCGCaa-GUUUUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 41871 0.69 0.618474
Target:  5'- gGCUGCGCAGCcuUUCAccAGCGcgCUCGu -3'
miRNA:   3'- aCGGCGCGUCGc-AAGUu-UUGCa-GAGC- -5'
17013 5' -52.6 NC_004333.2 + 40955 0.69 0.663723
Target:  5'- gGUCGCaCGGCaggCGAAACGUUUCGg -3'
miRNA:   3'- aCGGCGcGUCGcaaGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 40380 0.66 0.812075
Target:  5'- cGCCGCGCGGCcgacucgaacccgGUUgAAGACGgg-Ca -3'
miRNA:   3'- aCGGCGCGUCG-------------CAAgUUUUGCagaGc -5'
17013 5' -52.6 NC_004333.2 + 39970 1.1 0.001412
Target:  5'- cUGCCGCGCAGCGUUCAAAACGUCUCGa -3'
miRNA:   3'- -ACGGCGCGUCGCAAGUUUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 39835 0.66 0.831923
Target:  5'- cUGCCGUGauccaggaAGUGUUCAAGACGa---- -3'
miRNA:   3'- -ACGGCGCg-------UCGCAAGUUUUGCagagc -5'
17013 5' -52.6 NC_004333.2 + 38458 0.66 0.831923
Target:  5'- cGCCGaCGCGGCGUUucgCGAAccGCGUg-CGc -3'
miRNA:   3'- aCGGC-GCGUCGCAA---GUUU--UGCAgaGC- -5'
17013 5' -52.6 NC_004333.2 + 37738 0.67 0.783239
Target:  5'- cUGCCGCGCcuGCGcgagaUCGacGAGCGUCguuUCGu -3'
miRNA:   3'- -ACGGCGCGu-CGCa----AGU--UUUGCAG---AGC- -5'
17013 5' -52.6 NC_004333.2 + 37320 0.67 0.741237
Target:  5'- gGUCGCgGCGGUGcUCGAcGCG-CUCGa -3'
miRNA:   3'- aCGGCG-CGUCGCaAGUUuUGCaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.