miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17013 5' -52.6 NC_004333.2 + 998 0.69 0.674986
Target:  5'- cUGCUGCGCGgcagcGCGUUCuuccGGCGUCa-- -3'
miRNA:   3'- -ACGGCGCGU-----CGCAAGuu--UUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 44315 0.67 0.759362
Target:  5'- cGCUGCGCccguccgaagaugaAGUGUUCGAcACG-CUCu -3'
miRNA:   3'- aCGGCGCG--------------UCGCAAGUUuUGCaGAGc -5'
17013 5' -52.6 NC_004333.2 + 22511 0.67 0.751944
Target:  5'- cGCCGCGUucGCGacggccggCAAGACGcUUUCGa -3'
miRNA:   3'- aCGGCGCGu-CGCaa------GUUUUGC-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 47815 0.67 0.741237
Target:  5'- gGCC-UGCAGCuGUUCAAAGCGccgacgggcaUUUCGg -3'
miRNA:   3'- aCGGcGCGUCG-CAAGUUUUGC----------AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 12480 0.68 0.730414
Target:  5'- aGCCGa-CAcucGCGUUCGcgacugaaGGGCGUCUCGa -3'
miRNA:   3'- aCGGCgcGU---CGCAAGU--------UUUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 20499 0.68 0.708468
Target:  5'- cGCUGCaGC-GCGUUCAGGugcGCGaCUCGc -3'
miRNA:   3'- aCGGCG-CGuCGCAAGUUU---UGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 37301 0.68 0.708468
Target:  5'- cUGUCGCGcCGGCGUUCuucccgcgcGGCGUCa-- -3'
miRNA:   3'- -ACGGCGC-GUCGCAAGuu-------UUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 11047 0.68 0.686206
Target:  5'- cGUCGUGCGGCGU---GAGCGcUUCGa -3'
miRNA:   3'- aCGGCGCGUCGCAaguUUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 7114 0.68 0.686206
Target:  5'- cGCaCGUGCggauuGGCGgcgCGAAACGUgUCGa -3'
miRNA:   3'- aCG-GCGCG-----UCGCaa-GUUUUGCAgAGC- -5'
17013 5' -52.6 NC_004333.2 + 9729 0.67 0.76147
Target:  5'- cGUCGCGCcacGGaucgacaaaGUUCGAcgcggcaAGCGUCUCGa -3'
miRNA:   3'- aCGGCGCG---UCg--------CAAGUU-------UUGCAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 30891 0.67 0.772957
Target:  5'- cGCUGCGCcggccGGCGUUC---ACGUCg-- -3'
miRNA:   3'- aCGGCGCG-----UCGCAAGuuuUGCAGagc -5'
17013 5' -52.6 NC_004333.2 + 31190 0.67 0.772957
Target:  5'- aUGCCGCGaguugcGCGUUCGGuu--UCUCGg -3'
miRNA:   3'- -ACGGCGCgu----CGCAAGUUuugcAGAGC- -5'
17013 5' -52.6 NC_004333.2 + 19411 0.66 0.831923
Target:  5'- cGCCGCGacccGCGcggUCGAcGCGgcgCUCGc -3'
miRNA:   3'- aCGGCGCgu--CGCa--AGUUuUGCa--GAGC- -5'
17013 5' -52.6 NC_004333.2 + 27527 0.66 0.831923
Target:  5'- cUGCCacugGCGCAGCGccgUUgcGACG-CUCGc -3'
miRNA:   3'- -ACGG----CGCGUCGCa--AGuuUUGCaGAGC- -5'
17013 5' -52.6 NC_004333.2 + 44949 0.66 0.813041
Target:  5'- aUGCUGCcCGGCGUcaUCGGGGCGgg-CGg -3'
miRNA:   3'- -ACGGCGcGUCGCA--AGUUUUGCagaGC- -5'
17013 5' -52.6 NC_004333.2 + 17232 0.66 0.813041
Target:  5'- gGCCGC-CGGCGUaUCGccGGACGUgaUCGu -3'
miRNA:   3'- aCGGCGcGUCGCA-AGU--UUUGCAg-AGC- -5'
17013 5' -52.6 NC_004333.2 + 12091 0.66 0.803293
Target:  5'- cUGgCGCGCAGCGccgCGucACGggccagCUCGu -3'
miRNA:   3'- -ACgGCGCGUCGCaa-GUuuUGCa-----GAGC- -5'
17013 5' -52.6 NC_004333.2 + 10087 0.66 0.803293
Target:  5'- aUGCCGgGUaAGcCGUUCAGcaucACGaUCUCGg -3'
miRNA:   3'- -ACGGCgCG-UC-GCAAGUUu---UGC-AGAGC- -5'
17013 5' -52.6 NC_004333.2 + 1819 0.66 0.793355
Target:  5'- gGCCGCGCcaaauccgcAGCGgcgCAuAACGgcgcccgCUCGu -3'
miRNA:   3'- aCGGCGCG---------UCGCaa-GUuUUGCa------GAGC- -5'
17013 5' -52.6 NC_004333.2 + 29671 0.67 0.783239
Target:  5'- gGCCGCuGCAGCGUcCGucGGCGUgC-CGg -3'
miRNA:   3'- aCGGCG-CGUCGCAaGUu-UUGCA-GaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.