miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17014 5' -57.7 NC_004333.2 + 3935 0.66 0.564381
Target:  5'- gUGGcCGACGaucUGCuUCGGgACGGGUUGu -3'
miRNA:   3'- aGCC-GCUGCa--ACG-AGCUgUGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 15517 0.66 0.553627
Target:  5'- cCGGCGGCGcgucaaGCgCGAUguuaGCGGGCa- -3'
miRNA:   3'- aGCCGCUGCaa----CGaGCUG----UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 35783 0.66 0.544001
Target:  5'- gCGGCGACacuggcgcgccggGCggGGCGCGGGCg- -3'
miRNA:   3'- aGCCGCUGcaa----------CGagCUGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 18201 0.66 0.542935
Target:  5'- cUCGGCGccgguggcagcGCGgccgcGCUCGGCACGcGCUu -3'
miRNA:   3'- -AGCCGC-----------UGCaa---CGAGCUGUGCcCGAu -5'
17014 5' -57.7 NC_004333.2 + 47484 0.66 0.542935
Target:  5'- -gGGCGGCGgcacgaucgcGCUCaccgaGCACGGGCa- -3'
miRNA:   3'- agCCGCUGCaa--------CGAGc----UGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 26571 0.66 0.532311
Target:  5'- gCGGCGG-GUUGCUCuuugucaaAUGCGGGCg- -3'
miRNA:   3'- aGCCGCUgCAACGAGc-------UGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 5134 0.66 0.532311
Target:  5'- gUCGGUGuCGUagaaCUCGACauGCGGGCc- -3'
miRNA:   3'- -AGCCGCuGCAac--GAGCUG--UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 5239 0.66 0.521764
Target:  5'- uUCGGCGAUGaaGC-CGGC-CGGGUc- -3'
miRNA:   3'- -AGCCGCUGCaaCGaGCUGuGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 4654 0.66 0.511298
Target:  5'- aUGGCGACGggcagGC-CGGCgcGCGGGUc- -3'
miRNA:   3'- aGCCGCUGCaa---CGaGCUG--UGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 16867 0.66 0.511298
Target:  5'- -gGGCGcCG-UGCUCGGCGuCGGcGCa- -3'
miRNA:   3'- agCCGCuGCaACGAGCUGU-GCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 5494 0.67 0.500921
Target:  5'- gUCGGcCGGCGUggaGacgaUCGGCgcuguuGCGGGCUGc -3'
miRNA:   3'- -AGCC-GCUGCAa--Cg---AGCUG------UGCCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 45844 0.67 0.484514
Target:  5'- aCGGcCGcACGgUGCUCGcauuccgccaguucaACGCGGGCg- -3'
miRNA:   3'- aGCC-GC-UGCaACGAGC---------------UGUGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 45976 0.67 0.470373
Target:  5'- -aGGCGugGUgucccggccUGCcacUCGGCGCcgaGGGCUGg -3'
miRNA:   3'- agCCGCugCA---------ACG---AGCUGUG---CCCGAU- -5'
17014 5' -57.7 NC_004333.2 + 34310 0.67 0.46737
Target:  5'- uUCGcGCGGCGcggcgcgcucaaugcGCUCGACGCGGcGCc- -3'
miRNA:   3'- -AGC-CGCUGCaa-------------CGAGCUGUGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 19494 0.67 0.460402
Target:  5'- aUCGGCGcuggcgcgcugGCGgcGCUCGugGCcguauGGGCa- -3'
miRNA:   3'- -AGCCGC-----------UGCaaCGAGCugUG-----CCCGau -5'
17014 5' -57.7 NC_004333.2 + 44389 0.67 0.450543
Target:  5'- cUCGGCGGCGcgUGCgcgguacaaCGGCcugcCGGGCUc -3'
miRNA:   3'- -AGCCGCUGCa-ACGa--------GCUGu---GCCCGAu -5'
17014 5' -57.7 NC_004333.2 + 36123 0.67 0.450543
Target:  5'- gUUGGCGACGgccUGCgCGAC-CGGcGCa- -3'
miRNA:   3'- -AGCCGCUGCa--ACGaGCUGuGCC-CGau -5'
17014 5' -57.7 NC_004333.2 + 16820 0.67 0.450543
Target:  5'- gCGGCuGCGUcGCUCGGCAgCGGuCUGa -3'
miRNA:   3'- aGCCGcUGCAaCGAGCUGU-GCCcGAU- -5'
17014 5' -57.7 NC_004333.2 + 43899 0.67 0.450543
Target:  5'- cCGGgcaCGAUGUUGUgUCGAC-CGGGCg- -3'
miRNA:   3'- aGCC---GCUGCAACG-AGCUGuGCCCGau -5'
17014 5' -57.7 NC_004333.2 + 41722 0.68 0.431181
Target:  5'- aCGGCGcgaucaACGagGagaUCGGCGCGGGCg- -3'
miRNA:   3'- aGCCGC------UGCaaCg--AGCUGUGCCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.